MATISSE: An analysis protocol for combining imaging mass cytometry with fluorescence microscopy to generate single-cell data von Krijgsman, Daniëlle, Sinha, Neeraj, Baars, Matthijs J.D., van Dam, Stephanie, Amini, Mojtaba, Vercoulen, Yvonne

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Multiplex spatial omics reveals changes in immune-epithelial crosstalk during inflammation and dysplasia development in chronic IBD patients von Baars, Matthijs J.D., Floor, Evelien, Sinha, Neeraj, ter Linde, José J.M., van Dam, Stephanie, Amini, Mojtaba, Nijman, Isaäc J., ten Hove, Joren R., Drylewicz, Julia, Offerhaus, G.Johan A., Laclé, Miangela M., Oldenburg, Bas, Vercoulen, Yvonne

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Ablation of liver Fxr results in an increased colonic mucus barrier in mice von Ijssennagger, Noortje, van Rooijen, Kristel S., Magnúsdóttir, Stefanía, Ramos Pittol, José M., Willemsen, Ellen C.L., de Zoete, Marcel R., Baars, Matthijs J.D., Stege, Paul B., Colliva, Carolina, Pellicciari, Roberto, Youssef, Sameh A., de Bruin, Alain, Vercoulen, Yvonne, Kuipers, Folkert, van Mil, Saskia W.C.

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Highly multiplexed spatial analysis identifies tissue-resident memory T cells as drivers of ulcerative and immune checkpoint inhibitor colitis von van Eijs, Mick J.M., ter Linde, José J.M., Baars, Matthijs J.D., Amini, Mojtaba, Laclé, Miangela M., Brand, Eelco C., Delemarre, Eveline M., Drylewicz, Julia, Nierkens, Stefan, Verheijden, Rik J., Oldenburg, Bas, Vercoulen, Yvonne, Suijkerbuijk, Karijn P.M., van Wijk, Femke

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Dietary cystine restriction increases the proliferative capacity of the small intestine of mice von de Jong, Judith C W, van Rooijen, Kristel S, Stigter, Edwin C A, Gülersönmez, M Can, de Zoete, Marcel R, Top, Janetta, Baars, Matthijs J D, Vercoulen, Yvonne, Kuipers, Folkert, van Mil, Saskia W C, Ijssennagger, Noortje

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MATISSE: a method for improved single cell segmentation in imaging mass cytometry von Baars, Matthijs J D, Sinha, Neeraj, Amini, Mojtaba, Pieterman-Bos, Annelies, van Dam, Stephanie, Ganpat, Maroussia M P, Laclé, Miangela M, Oldenburg, Bas, Vercoulen, Yvonne

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Dysregulated RASGRP1 expression through RUNX1 mediated transcription promotes autoimmunity von Baars, Matthijs J.D., Douma, Thera, Simeonov, Dimitre R., Myers, Darienne R., Kulhanek, Kayla, Banerjee, Saikat, Zwakenberg, Susan, Baltissen, Marijke P., Amini, Mojtaba, Roock, Sytze, Wijk, Femke, Vermeulen, Michiel, Marson, Alexander, Roose, Jeroen P., Vercoulen, Yvonne

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Multiplex Tissue Imaging: Spatial Revelations in the Tumor Microenvironment von van Dam, Stephanie, Baars, Matthijs J.D, Vercoulen, Yvonne

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Dietary cystine restriction increases the proliferative capacity of the small intestine of mice von de Jong, Judith C.W, van Rooijen, Kristel S, Stigter, Edwin C.A, Gülersönmez, M. Can, de Zoete, Marcel R, Top, Janetta, Baars, Matthijs J.D, Vercoulen, Yvonne, Kuipers, Folkert, Van Mil, Saskia W.C, Ijssennagger, Noortje

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Dysregulated RASGRP1 expression through RUNX1 mediated transcription promotes autoimmunity von Baars, Matthijs J.D, Douma, Thera, Simeonov, Dimitre R, Myers, Darienne R, Kulhanek, Kayla, Banerjee, Saikat, Zwakenberg, Susan, Baltissen, Marijke P, Amini, Mojtaba, de Roock, Sytze, van Wijk, Femke, Vermeulen, Michiel, Marson, Alexander, Roose, Jeroen P, Vercoulen, Yvonne

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MATISSE: An analysis protocol for combining imaging mass cytometry with fluorescence microscopy to generate single-cell data von Krijgsman, Daniëlle, Sinha, Neeraj, Baars, Matthijs J.D, van Dam, Stephanie, Amini, Mojtaba, Vercoulen, Yvonne

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Multiplex spatial omics reveals changes in immune-epithelial crosstalk during inflammation and dysplasia development in chronic IBD patients von Baars, Matthijs J.D, Floor, Evelien, Sinha, Neeraj, ter Linde, José J.M, van Dam, Stephanie, Amini, Mojtaba, Nijman, Isaäc J, ten Hove, Joren R, Drylewicz, Julia, Offerhaus, G. Johan A, Laclé, Miangela M, Oldenburg, Bas, Vercoulen, Yvonne

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Highly multiplexed spatial analysis identifies tissue-resident memory T cells as drivers of ulcerative and immune checkpoint inhibitor colitis von van Eijs, Mick J.M, ter Linde, José J.M, Baars, Matthijs J.D, Amini, Mojtaba, Laclé, Miangela M, Brand, Eelco C, Delemarre, Eveline M, Drylewicz, Julia, Nierkens, Stefan, Verheijden, Rik J, Oldenburg, Bas, Vercoulen, Yvonne, Suijkerbuijk, Karijn P.M, van Wijk, Femke

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Ablation of liver Fxr results in an increased colonic mucus barrier in mice von Ijssennagger, Noortje, van Rooijen, Kristel S, Magnúsdóttir, Stefanía, Ramos Pittol, José M, Willemsen, Ellen C.L, de Zoete, Marcel R, Baars, Matthijs J.D, Stege, Paul B, Colliva, Carolina, Pellicciari, Roberto, Youssef, Sameh A, de Bruin, Alain, Vercoulen, Yvonne, Kuipers, Folkert, van Mil, Saskia W.C

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Ablation of liver Fxr results in an increased colonic mucus barrier in mice von Ijssennagger, Noortje, van Rooijen, Kristel S, Magnúsdóttir, Stefanía, Ramos Pittol, José M, Willemsen, Ellen C.L, de Zoete, Marcel R, Baars, Matthijs J.D, Stege, Paul B, Colliva, Carolina, Pellicciari, Roberto, Youssef, Sameh A, de Bruin, Alain, Vercoulen, Yvonne, Kuipers, Folkert, van Mil, Saskia W.C

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Publisher Correction to: MATISSE: a method for improved single cell segmentation in imaging mass cytometry (BMC Biology, (2021), 19, 1, (99), 10.1186/s12915-021-01043-y) von Baars, Matthijs J.D, Sinha, Neeraj, Amini, Mojtaba, Pieterman-Bos, Annelies, van Dam, Stephanie, Ganpat, Maroussia M.P, Laclé, Miangela M, Oldenburg, Bas, Vercoulen, Yvonne

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MATISSE: a method for improved single cell segmentation in imaging mass cytometry von Baars, Matthijs J.D, Sinha, Neeraj, Amini, Mojtaba, Pieterman-Bos, Annelies, Van Dam, Stephanie, Maroussia M.P. Ganpat, Miangela M. Laclé, Oldenburg, Bas, Vercoulen, Yvonne

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Assay of urinary 5-hydroxyindole-3-acetic acid: two methodologies compared von Baars, J.D., van Haard, P.M.M., Lombarts, A.J.P.F.

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Simplified glutamine assay in CSF as a measure of hepatic encephalopathy von Harst, P.v.d., Baars, J.D., Lombarts, A.J.P.F.

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Glucose-6-phosphate dehydrogenase (G-6-PD) activity in human adipose tissue von Tjabbes, T., Baars, J.D., Blom, P.S.

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