DIAMOND+MEGAN: Fast and Easy Taxonomic and Functional Analysis of Short and Long Microbiome Sequences von Bağcı, Caner, Patz, Sascha, Huson, Daniel H.

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Computational Prediction of MicroRNAs from Toxoplasma gondii Potentially Regulating the Hosts’ Gene Expression von Saçar, Müşerref Duygu, Bağcı, Caner, Allmer, Jens

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One Step Forward, Two Steps Back; Xeno-MicroRNAs Reported in Breast Milk Are Artifacts von Bağcı, Caner, Allmer, Jens

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MAIRA- real-time taxonomic and functional analysis of long reads on a laptop von Albrecht, Benjamin, Bagci, Caner, Huson, Daniel H.

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MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs von Huson, Daniel H, Albrecht, Benjamin, Bağcı, Caner, Bessarab, Irina, Górska, Anna, Jolic, Dino, Williams, Rohan B H

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The Isolate Caproiciproducens sp. 7D4C2 Produces n-Caproate at Mildly Acidic Conditions From Hexoses: Genome and rBOX Comparison With Related Strains and Chain-Elongating Bacteria von Esquivel-Elizondo, Sofia, Bagci, Caner, Temovska, Monika, Jeon, Byoung Seung, Bessarab, Irina, Williams, Rohan B. H., Huson, Daniel H., Angenent, Largus T.

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Annotated bacterial chromosomes from frame-shift-corrected long-read metagenomic data von Arumugam, Krithika, Bağcı, Caner, Bessarab, Irina, Beier, Sina, Buchfink, Benjamin, Górska, Anna, Qiu, Guanglei, Huson, Daniel H, Williams, Rohan B H

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Using AnnoTree to Get More Assignments, Faster, in DIAMOND+MEGAN Microbiome Analysis von Gautam, Anupam, Felderhoff, Hendrik, Bağci, Caner, Huson, Daniel H

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BGC Atlas: a web resource for exploring the global chemical diversity encoded in bacterial genomes von Bağcı, Caner, Nuhamunada, Matin, Goyat, Hemant, Ladanyi, Casimir, Sehnal, Ludek, Blin, Kai, Kautsar, Satria A, Tagirdzhanov, Azat, Gurevich, Alexey, Mantri, Shrikant, von Mering, Christian, Udwary, Daniel, Medema, Marnix H, Weber, Tilmann, Ziemert, Nadine

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MAIRA: Protein-based Analysis of MinION Reads on a Laptop von Bağcı, Caner, Albrecht, Benjamin, Huson, Daniel H.

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Microbial Phylogenetic Context Using Phylogenetic Outlines von Bagci, Caner, Bryant, David, Cetinkaya, Banu, Huson, Daniel H

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One Step Forward, Two Steps Back; Xeno-MicroRNAs Reported in Breast Milk Are Artifacts: e0145065 von Bagci, Caner, Allmer, Jens

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Strong pairwise interactions do not drive interactions in a plant leaf associated microbial community von Höhn, Franziska, Chaudhry, Vasvi, Bagci, Caner, Mahmoudi, Maryam, Klenk3, Elke, Berg, Lara, Stincone, Paolo, Hughes, Chambers C, Petras, Daniel, Brötz-Oesterhelt, Heike, Kemen, Eric, Ziemert, Nadine

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Strong pairwise interactions do not drive interactions in a plant leaf associated microbial community von Höhn, Franziska

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Removing contamination from genomic sequences based on vector reference libraries von Bagci, C., Allmer, J.

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Transkriptomik Veri Yaklaşımı ile Kutanöz Leyşmanyazisteki Moleküler Sinyal Yolakların ve Regülatör Moleküllerin Tanımlanması von Ulusan Bağcı, Özlem, Caner, Ayşe

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The Role of MicroRNAs in Parasitology von Ulusan Bağcı, Özlem, Caner, Ayşe

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Comparative Gene Expression Profiles of Leishmania major and Leishmania infantum Promastigotes von Ulusan Bağcı, Özlem, Sadıqova, Aygül, Caner, Ayşe

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miRNA Expression Profile in Ileocecal Adenocarcinoma Cells Infected with Cryptosporidium von Ulusan Bağcı, Özlem, Caner, Ayşe

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Defining the Molecular Signal Pathways and Upstream Regulators in Cutaneous Leishmaniasis with Transcriptomic Data Approach von Ulusan Bagci, Ozlem, Caner, Ayse

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