Analysing high-throughput sequencing data in Python with HTSeq 2.0 von Putri, Givanna H, Anders, Simon, Pyl, Paul Theodor, Pimanda, John E, Zanini, Fabio

Volltext

Health Benefits of Polyphenols and Carotenoids in Age-Related Eye Diseases von Kadonosono, Kazuaki, Maruyama-Inoue, Maiko, Sato, Shimpei, Ghanem, Esraa, Tit, Delia Mirela, Abdel-Daim, Mohamed M., Bungǎu, Simona G., Yamane, Shin

Volltext

SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor von Righelli, Dario, Weber, Lukas M, Crowell, Helena L, Pardo, Brenda, Collado-Torres, Leonardo, Ghazanfar, Shila, Lun, Aaron T L, Hicks, Stephanie C, Risso, Davide

Volltext

GNN-based embedding for clustering scRNA-seq data von Ciortan, Madalina, Defrance, Matthieu

Volltext

Matrine Attenuates D-Galactose-Induced Aging-Related Behavior in Mice via Inhibition of Cellular Senescence and Oxidative Stress von Bai, Yuting, Zhao, Rong, Yang, Pengyu, Sun, Kaiyue, Guo, Zijiao

Volltext

monaLisa: an R/Bioconductor package for identifying regulatory motifs von Machlab, Dania, Burger, Lukas, Soneson, Charlotte, Rijli, Filippo M, Schübeler, Dirk, Stadler, Michael B

Volltext

DRUMMER—rapid detection of RNA modifications through comparative nanopore sequencing von Abebe, Jonathan S, Price, Alexander M, Hayer, Katharina E, Mohr, Ian, Weitzman, Matthew D, Wilson, Angus C, Depledge, Daniel P

Volltext

Graph attention network for link prediction of gene regulations from single-cell RNA-sequencing data von Chen, Guangyi, Liu, Zhi-Ping

Volltext

MARSY: a multitask deep-learning framework for prediction of drug combination synergy scores von El Khili, Mohamed Reda, Memon, Safyan Aman, Emad, Amin

Volltext

CellVGAE: an unsupervised scRNA-seq analysis workflow with graph attention networks von Buterez, David, Bica, Ioana, Tariq, Ifrah, Andrés-Terré, Helena, Liò, Pietro

Volltext

LncLocFormer: a Transformer-based deep learning model for multi-label lncRNA subcellular localization prediction by using localization-specific attention mechanism von Zeng, Min, Wu, Yifan, Li, Yiming, Yin, Rui, Lu, Chengqian, Duan, Junwen, Li, Min

Volltext

XGBLC: an improved survival prediction model based on XGBoost von Ma, Baoshan, Yan, Ge, Chai, Bingjie, Hou, Xiaoyu

Volltext

E-SNPs&GO: embedding of protein sequence and function improves the annotation of human pathogenic variants von Manfredi, Matteo, Savojardo, Castrense, Martelli, Pier Luigi, Casadio, Rita

Volltext

EnDecon: cell type deconvolution of spatially resolved transcriptomics data via ensemble learning von Tu, Jia-Juan, Li, Hui-Sheng, Yan, Hong, Zhang, Xiao-Fei

Volltext

A convolutional neural network and graph convolutional network-based method for predicting the classification of anatomical therapeutic chemicals von Zhao, Haochen, Li, Yaohang, Wang, Jianxin

Volltext

Nanoencapsulated Quercetin Improves Cardioprotection during Hypoxia-Reoxygenation Injury through Preservation of Mitochondrial Function von Garcia-Rivas, Gerardo, Bernal-Ramírez, Judith, Torres-Quintanilla, Alejandro, Oropeza-Almazán, Yuriana, Silva-Platas, Christian, Lázaro-Alfaro, Anay, Lozano, Omar, Alves-Figueiredo, Hugo

Volltext

WMSA: a novel method for multiple sequence alignment of DNA sequences von Wei, Yanming, Zou, Quan, Tang, Furong, Yu, Liang

Volltext

DeepMicroGen: a generative adversarial network-based method for longitudinal microbiome data imputation von Choi, Joung Min, Ji, Ming, Watson, Layne T, Zhang, Liqing

Volltext

Deep single-cell RNA-seq data clustering with graph prototypical contrastive learning von Lee, Junseok, Kim, Sungwon, Hyun, Dongmin, Lee, Namkyeong, Kim, Yejin, Park, Chanyoung

Volltext

blitzGSEA: efficient computation of gene set enrichment analysis through gamma distribution approximation von Lachmann, Alexander, Xie, Zhuorui, Ma’ayan, Avi

Volltext