The immune epitope database and analysis resource: from vision to blueprint von Peters, Bjoern, Sidney, John, Bourne, Phil, Bui, Huynh-Hoa, Buus, Soeren, Doh, Grace, Fleri, Ward, Kronenberg, Mitch, Kubo, Ralph, Lund, Ole, Nemazee, David, Ponomarenko, Julia V, Sathiamurthy, Muthu, Schoenberger, Stephen, Stewart, Scott, Surko, Pamela, Way, Scott, Wilson, Steve, Sette, Alessandro

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Accurate pan-specific prediction of peptide-MHC class II binding affinity with improved binding core identification von Andreatta, Massimo, Karosiene, Edita, Rasmussen, Michael, Stryhn, Anette, Buus, Søren, Nielsen, Morten

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Pan-Specific Prediction of Peptide-MHC Class I Complex Stability, a Correlate of T Cell Immunogenicity von Rasmussen, Michael, Fenoy, Emilio, Harndahl, Mikkel, Kristensen, Anne Bregnballe, Nielsen, Ida Kallehauge, Nielsen, Morten, Buus, Søren

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NetMHCIIpan-3.0, a common pan-specific MHC class II prediction method including all three human MHC class II isotypes, HLA-DR, HLA-DP and HLA-DQ von Karosiene, Edita, Rasmussen, Michael, Blicher, Thomas, Lund, Ole, Buus, Søren, Nielsen, Morten

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NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11 von Lundegaard, Claus, Lamberth, Kasper, Harndahl, Mikkel, Buus, Søren, Lund, Ole, Nielsen, Morten

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MHCcluster, a method for functional clustering of MHC molecules von Thomsen, Martin, Lundegaard, Claus, Buus, Søren, Lund, Ole, Nielsen, Morten

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MHC Class II epitope predictive algorithms von Nielsen, Morten, Lund, Ole, Buus, Søren, Lundegaard, Claus

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Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions von Kim, Yohan, Sidney, John, Buus, Søren, Sette, Alessandro, Nielsen, Morten, Peters, Bjoern

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Peptide‐MHC class I stability is a better predictor than peptide affinity of CTL immunogenicity von Harndahl, Mikkel, Rasmussen, Michael, Roder, Gustav, Dalgaard Pedersen, Ida, Sørensen, Mikael, Nielsen, Morten, Buus, Søren

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Magnitude and Kinetics of CD8+ T Cell Activation during Hyperacute HIV Infection Impact Viral Set Point von Ndhlovu, Zaza M., Kamya, Philomena, Mewalal, Nikoshia, Kløverpris, Henrik N., Nkosi, Thandeka, Pretorius, Karyn, Laher, Faatima, Ogunshola, Funsho, Chopera, Denis, Shekhar, Karthik, Ghebremichael, Musie, Ismail, Nasreen, Moodley, Amber, Malik, Amna, Leslie, Alasdair, Goulder, Philip J.R., Buus, Søren, Chakraborty, Arup, Dong, Krista, Ndung’u, Thumbi, Walker, Bruce D.

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High-resolution Mapping of Linear Antibody Epitopes Using Ultrahigh-density Peptide Microarrays von Buus, Søren, Rockberg, Johan, Forsström, Björn, Nilsson, Peter, Uhlen, Mathias, Schafer-Nielsen, Claus

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NetMHCstab – predicting stability of peptide–MHC‐I complexes; impacts for cytotoxic T lymphocyte epitope discovery von Jørgensen, Kasper W., Rasmussen, Michael, Buus, Søren, Nielsen, Morten

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Major histocompatibility complex class I binding predictions as a tool in epitope discovery von Lundegaard, Claus, Lund, Ole, Buus, Søren, Nielsen, Morten

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Quantitative predictions of peptide binding to any HLA-DR molecule of known sequence: NetMHCIIpan von Nielsen, Morten, Lundegaard, Claus, Blicher, Thomas, Peters, Bjoern, Sette, Alessandro, Justesen, Sune, Buus, Søren, Lund, Ole

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Real-time, high-throughput measurements of peptide–MHC-I dissociation using a scintillation proximity assay von Harndahl, Mikkel, Rasmussen, Michael, Roder, Gustav, Buus, Søren

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CD8+ T cells complement antibodies in protecting against yellow fever virus von Bassi, Maria R, Kongsgaard, Michael, Steffensen, Maria A, Fenger, Christina, Rasmussen, Michael, Skjødt, Karsten, Finsen, Bente, Stryhn, Anette, Buus, Søren, Christensen, Jan P, Thomsen, Allan R

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HIV Controllers Exhibit Enhanced Frequencies of Major Histocompatibility Complex Class II Tetramer + Gag-Specific CD4 + T Cells in Chronic Clade C HIV-1 Infection von Laher, Faatima, Ranasinghe, Srinika, Porichis, Filippos, Mewalal, Nikoshia, Pretorius, Karyn, Ismail, Nasreen, Buus, Søren, Stryhn, Anette, Carrington, Mary, Walker, Bruce D, Ndung'u, Thumbi, Ndhlovu, Zaza M

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Comparison of vaccine-induced effector CD8 T cell responses directed against self- and non-self-tumor antigens: implications for cancer immunotherapy von Pedersen, Sara R, Sørensen, Maria R, Buus, Søren, Christensen, Jan P, Thomsen, Allan R

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Different binding motifs of the celiac disease-associated HLA molecules DQ2.5, DQ2.2, and DQ7.5 revealed by relative quantitative proteomics of endogenous peptide repertoires von Bergseng, Elin, Dørum, Siri, Arntzen, Magnus Ø., Nielsen, Morten, Nygård, Ståle, Buus, Søren, de Souza, Gustavo A., Sollid, Ludvig M.

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An integrative approach to CTL epitope prediction: A combined algorithm integrating MHC class I binding, TAP transport efficiency, and proteasomal cleavage predictions von Larsen, Mette Voldby, Lundegaard, Claus, Lamberth, Kasper, Buus, Søren, Brunak, Søren, Lund, Ole, Nielsen, Morten

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