A cell-based Papain-like Protease (PLpro) activity assay for rapid detection of active SARS-CoV-2 infections and antivirals von Jimenez-Campos, Anahi G, Maestas, Lucas I, Velappan, Nileena, Beck, Brian, Ye, Chunyan, Wernsing, Keith, Mata-Solis, Yaniksa, Bruno, William J, Bussmann, Silas C, Bradfute, Steven, Baca, Justin T, Rininsland, Frauke H

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Automated Maximum Likelihood Separation of Signal from Baseline in Noisy Quantal Data von Bruno, William J., Ullah, Ghanim, Daniel Mak, Don-On, Pearson, John E.

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Polymorphisms in the Nine Polymorphic Membrane Proteins of Chlamydia trachomatis across All Serovars: Evidence for Serovar Da Recombination and Correlation with Tissue Tropism von GOMES, Joao P, NUNES, Alexandra, BRUNO, William J, BORREGO, Maria J, FLORINDO, Carlos, DEAN, Deborah

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Predicting phenotype and emerging strains among Chlamydia trachomatis infections von Dean, Deborah, Bruno, William J, Wan, Raymond, Gomes, João P, Devignot, Stéphanie, Mehari, Tigist, de Vries, Henry J C, Morré, Servaas A, Myers, Garry, Read, Timothy D, Spratt, Brian G

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Evolutionary HMMs: a Bayesian approach to multiple alignment von Holmes, Ian, Bruno, William J.

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Genotype turnover by reassortment of replication complex genes from avian Influenza A virus von Macken, Catherine A, Webby, Richard J, Bruno, William J

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Using Independent Open-to-Closed Transitions to Simplify Aggregated Markov Models of Ion Channel Gating Kinetics von Bruno, William J., Yang, Jin, Pearson, John E., Swinney, Harry L.

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In Vitro Recombinants of Antibiotic-Resistant Chlamydia trachomatis Strains Have Statistically More Breakpoints than Clinical Recombinants for the Same Sequenced Loci and Exhibit S... von Srinivasan, Tara, Bruno, William J, Wan, Raymond, Yen, Albert, Duong, Jennifer, Dean, Deborah

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On Imposing Detailed Balance in Complex Reaction Mechanisms von Yang, Jin, Bruno, William J., Hlavacek, William S., Pearson, John E.

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Recombination in the Genome of Chlamydia trachomatis Involving the Polymorphic Membrane Protein C Gene Relative to ompA and Evidence for Horizontal Gene Transfer von GOMES, Joao P, BRUNO, William J, BORREGO, Maria J, DEAN, Deborah

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Rapid phylogenetic and functional classification of short genomic fragments with signature peptides von Berendzen, Joel, Bruno, William J, Cohn, Judith D, Hengartner, Nicolas W, Kuske, Cheryl R, McMahon, Benjamin H, Wolinsky, Murray A, Xie, Gary

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Performance of a divergence time estimation method under a probabilistic model of rate evolution von Kishino, H, Thorne, J L, Bruno, W J

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Comparative analysis of hepatitis C virus phylogenies from coding and non-coding regions: the 5' untranslated region (UTR) fails to classify subtypes von Hraber, Peter T, Fischer, William, Bruno, William J, Leitner, Thomas, Kuiken, Carla

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Simplification of reversible Markov chains by removal of states with low equilibrium occupancy von Ullah, Ghanim, Bruno, William J., Pearson, John E.

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Evolution of Chlamydia trachomatis diversity occurs by widespread interstrain recombination involving hotspots von Gomes, João P, Bruno, William J, Nunes, Alexandra, Santos, Nicole, Florindo, Carlos, Borrego, Maria J, Dean, Deborah

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Weighted neighbor joining: a likelihood-based approach to distance-based phylogeny reconstruction von Bruno, W J, Socci, N D, Halpern, A L

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Development of Forensic Assay Signatures for Ebolaviruses von Song, Jian, Doggett, Norman, Wren, Melinda, Burr, Tom, Fenimore, P. W., Hatcher, Eneida L., Bruno, William J., Li, Po-E, Stubben, Chris, Wolinsky, Murray

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Classification of hepatitis C virus and human immunodeficiency virus-1 sequences with the branching index von Hraber, Peter, Kuiken, Carla, Waugh, Mark, Geer, Shaun, Bruno, William J, Leitner, Thomas

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The consistent phylogenetic signal in genome trees revealed by reducing the impact of noise von Dutilh, Bas E, Huynen, Martijn A, Bruno, William J, Snel, Berend

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A cell-based Papain-like Protease von Jimenez-Campos, Anahi G, Maestas, Lucas I, Velappan, Nileena, Beck, Brian, Ye, Chunyan, Wernsing, Keith, Mata-Solis, Yaniksa, Bruno, William J, Bussmann, Silas C, Bradfute, Steven, Baca, Justin T, Rininsland, Frauke H

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