Encephalitis diagnosis using metagenomics: application of next generation sequencing for undiagnosed cases von Brown, Julianne R., Bharucha, Tehmina, Breuer, Judith

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The emerging GII.P16-GII.4 Sydney 2012 norovirus lineage is circulating worldwide, arose by late-2014 and contains polymerase changes that may increase virus transmission von Ruis, Christopher, Roy, Sunando, Brown, Julianne R, Allen, David J, Goldstein, Richard A, Breuer, Judith

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Viral gastrointestinal infections and norovirus genotypes in a paediatric UK hospital, 2014–2015 von Brown, Julianne R, Shah, Divya, Breuer, Judy

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Norovirus Infections Occur in B-Cell–Deficient Patients von Brown, Julianne R., Gilmour, Kimberly, Breuer, Judith

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Astrovirus VA1/HMO-C: An Increasingly Recognized Neurotropic Pathogen in Immunocompromised Patients von Brown, Julianne R., Morfopoulou, Sofia, Hubb, Jonathan, Emmett, Warren A., Ip, Winnie, Shah, Divya, Brooks, Tony, Paine, Simon M. L., Anderson, Glenn, Virasami, Alex, Tong, C. Y. William, Clark, Duncan A., Plagnol, Vincent, Jacques, Thomas S., Qasim, Waseem, Hubank, Mike, Breuer, Judith

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Human Coronavirus OC43 Associated with Fatal Encephalitis von Morfopoulou, Sofia, Brown, Julianne R, Davies, E. Graham, Anderson, Glenn, Virasami, Alex, Qasim, Waseem, Chong, Wui K, Hubank, Michael, Plagnol, Vincent, Desforges, Marc, Jacques, Thomas S, Talbot, Pierre J, Breuer, Judith

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Diagnostic yield of broad-range 16s rRNA gene PCR varies by sample type and is improved by the addition of qPCR panels targeting the most common causative organisms von Harris, Kathryn A, Brown, Julianne R

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Norovirus Whole-Genome Sequencing by SureSelect Target Enrichment: a Robust and Sensitive Method von Brown, Julianne R, Roy, Sunando, Ruis, Christopher, Yara Romero, Erika, Shah, Divya, Williams, Rachel, Breuer, Judy

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Recommendations for the introduction of metagenomic next-generation sequencing in clinical virology, part II: bioinformatic analysis and reporting von de Vries, Jutte J.C., Brown, Julianne R., Couto, Natacha, Beer, Martin, Le Mercier, Philippe, Sidorov, Igor, Papa, Anna, Fischer, Nicole, Oude Munnink, Bas B., Rodriquez, Christophe, Zaheri, Maryam, Sayiner, Arzu, Hönemann, Mario, Pérez-Cataluña, Alba, Carbo, Ellen C., Bachofen, Claudia, Kubacki, Jakub, Schmitz, Dennis, Tsioka, Katerina, Matamoros, Sébastien, Höper, Dirk, Hernandez, Marta, Puchhammer-Stöckl, Elisabeth, Lebrand, Aitana, Huber, Michael, Simmonds, Peter, Claas, Eric C.J., López-Labrador, F. Xavier

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Rapid Whole-Genome Sequencing of Mycobacterium tuberculosis Isolates Directly from Clinical Samples von Brown, Amanda C, Bryant, Josephine M, Einer-Jensen, Katja, Holdstock, Jolyon, Houniet, Darren T, Chan, Jacqueline Z M, Depledge, Daniel P, Nikolayevskyy, Vladyslav, Broda, Agnieszka, Stone, Madeline J, Christiansen, Mette T, Williams, Rachel, McAndrew, Michael B, Tutill, Helena, Brown, Julianne, Melzer, Mark, Rosmarin, Caryn, McHugh, Timothy D, Shorten, Robert J, Drobniewski, Francis, Speight, Graham, Breuer, Judith

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Norovirus Transmission Dynamics in a Pediatric Hospital Using Full Genome Sequences von Brown, Julianne R, Roy, Sunando, Shah, Divya, Williams, Charlotte A, Williams, Rachel, Dunn, Helen, Hartley, John, Harris, Kathryn, Breuer, Judy

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Parvovirus B19 myocarditis in children: an observational study von Vigneswaran, Trisha V, Brown, Julianne R, Breuer, Judith, Burch, Michael

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Super-infections and relapses occur in chronic norovirus infections von Brown, Julianne R., Roy, Sunando, Tutill, Helena, Williams, Rachel, Breuer, Judith

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STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies von Bharucha, Tehmina, Oeser, Clarissa, Balloux, Francois, Brown, Julianne R, Carbo, Ellen C, Charlett, Andre, Chiu, Charles Y, Claas, Eric C J, de Goffau, Marcus C, de Vries, Jutte J C, Eloit, Marc, Hopkins, Susan, Huggett, Jim F, MacCannell, Duncan, Morfopoulou, Sofia, Nath, Avindra, O'Sullivan, Denise M, Reoma, Lauren B, Shaw, Liam P, Sidorov, Igor, Simner, Patricia J, Van Tan, Le, Thomson, Emma C, van Dorp, Lucy, Wilson, Michael R, Breuer, Judith, Field, Nigel

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Norovirus infection in primary immune deficiency von Brown, Li‐An K., Clark, Ian, Brown, Julianne R., Breuer, Judith, Lowe, David M.

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A comprehensive characterization of chronic norovirus infection in immunodeficient hosts von Brown, Li-An K., Ruis, Christopher, Clark, Ian, Roy, Sunando, Brown, Julianne R., Albuquerque, Adriana S., Patel, Smita Y., Miller, Joanne, Karim, Mohammed Yousuf, Dervisevic, Samir, Moore, Jennifer, Williams, Charlotte A., Cudini, Juliana, Moreira, Fernando, Neild, Penny, Seneviratne, Suranjith L., Workman, Sarita, Toumpanakis, Christos, Atkinson, Claire, Burns, Siobhan O., Breuer, Judith, Lowe, David M.

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Evaluating metagenomics and targeted approaches for diagnosis and surveillance of viruses von Buddle, Sarah, Forrest, Leysa, Akinsuyi, Naomi, Martin Bernal, Luz Marina, Brooks, Tony, Venturini, Cristina, Miller, Charles, Brown, Julianne R, Storey, Nathaniel, Atkinson, Laura, Best, Timothy, Roy, Sunando, Goldsworthy, Sian, Castellano, Sergi, Simmonds, Peter, Harvala, Heli, Golubchik, Tanya, Williams, Rachel, Breuer, Judith, Morfopoulou, Sofia, Torres Montaguth, Oscar Enrique

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Recommendations for the introduction of metagenomic high-throughput sequencing in clinical virology, part I: Wet lab procedure von López-Labrador, F. Xavier, Brown, Julianne R., Fischer, Nicole, Harvala, Heli, Van Boheemen, Sander, Cinek, Ondrej, Sayiner, Arzu, Madsen, Tina Vasehus, Auvinen, Eeva, Kufner, Verena, Huber, Michael, Rodriguez, Christophe, Jonges, Marcel, Hönemann, Mario, Susi, Petri, Sousa, Hugo, Klapper, Paul E., Pérez-Cataluňa, Alba, Hernandez, Marta, Molenkamp, Richard, der Hoek, Lia van, Schuurman, Rob, Couto, Natacha, Leuzinger, Karoline, Simmonds, Peter, Beer, Martin, Höper, Dirk, Kamminga, Sergio, Feltkamp, Mariet C.W., Rodríguez-Díaz, Jesús, Keyaerts, Els, Nielsen, Xiaohui Chen, Puchhammer-Stöckl, Elisabeth, Kroes, Aloys C.M., Buesa, Javier, Breuer, Judy, Claas, Eric C.J., de Vries, Jutte J.C.

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Acute Retinal Necrosis Caused by the Zoster Vaccine Virus von Heath, Gregory, Depledge, Daniel P., Brown, Julianne R., Hale, Anthony D., Tutil, Helena, Williams, Rachel, Breuer, Judith

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Use of Whole-Genome Sequencing of Adenovirus in Immunocompromised Pediatric Patients to Identify Nosocomial Transmission and Mixed-Genotype Infection von Houldcroft, Charlotte J, Roy, Sunando, Morfopoulou, Sofia, Margetts, Ben K, Depledge, Daniel P, Cudini, Juliana, Shah, Divya, Brown, Julianne R, Romero, Erika Yara, Williams, Rachel, Cloutman-Green, Elaine, Rao, Kanchan, Standing, Joseph F, Hartley, John C, Breuer, Judith

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