Strain-dependent diversity in the Pseudomonas aeruginosa quorum-sensing regulon von Chugani, Sudha, Kim, Byoung Sik, Phattarasukol, Somsak, Brittnacher, Mitchell. J, Choi, Sang Ho, Harwood, Caroline S, Greenberg, E. Peter

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CFTR dysregulation drives active selection of the gut microbiome von Meeker, Stacey M, Mears, Kevin S, Sangwan, Naseer, Brittnacher, Mitchell J, Weiss, Eli J, Treuting, Piper M, Tolley, Nicholas, Pope, Christopher E, Hager, Kyle R, Vo, Anh T, Paik, Jisun, Frevert, Charles W, Hayden, Hillary S, Hoffman, Lucas R, Miller, Samuel I, Hajjar, Adeline M

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Fecal microbial transplant effect on clinical outcomes and fecal microbiome in active Crohn's disease von Suskind, David L, Brittnacher, Mitchell J, Wahbeh, Ghassan, Shaffer, Michele L, Hayden, Hillary S, Qin, Xuan, Singh, Namita, Damman, Christopher J, Hager, Kyle R, Nielson, Heather, Miller, Samuel I

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Human and Extracellular DNA Depletion for Metagenomic Analysis of Complex Clinical Infection Samples Yields Optimized Viable Microbiome Profiles von Nelson, Maria T., Pope, Christopher E., Marsh, Robyn L., Wolter, Daniel J., Weiss, Eli J., Hager, Kyle R., Vo, Anh T., Brittnacher, Mitchell J., Radey, Matthew C., Hayden, Hillary S., Eng, Alexander, Miller, Samuel I., Borenstein, Elhanan, Hoffman, Lucas R.

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Evolution of Burkholderia pseudomallei in recurrent melioidosis von Hayden, Hillary S, Lim, Regina, Brittnacher, Mitchell J, Sims, Elizabeth H, Ramage, Elizabeth R, Fong, Christine, Wu, Zaining, Crist, Eva, Chang, Jean, Zhou, Yang, Radey, Matthew, Rohmer, Laurence, Haugen, Eric, Gillett, Will, Wuthiekanun, Vanaporn, Peacock, Sharon J, Kaul, Rajinder, Miller, Samuel I, Manoil, Colin, Jacobs, Michael A

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Low Level Engraftment and Improvement following a Single Colonoscopic Administration of Fecal Microbiota to Patients with Ulcerative Colitis von Damman, Christopher J, Brittnacher, Mitchell J, Westerhoff, Maria, Hayden, Hillary S, Radey, Matthew, Hager, Kyle R, Marquis, Sara R, Miller, Samuel I, Zisman, Timothy L

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Resources for Genetic and Genomic Analysis of Emerging Pathogen Acinetobacter baumannii von Gallagher, Larry A, Ramage, Elizabeth, Weiss, Eli J, Radey, Matthew, Hayden, Hillary S, Held, Kiara G, Huse, Holly K, Zurawski, Daniel V, Brittnacher, Mitchell J, Manoil, Colin

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Fecal dysbiosis in infants with cystic fibrosis is associated with early linear growth failure von Hayden, Hillary S., Eng, Alexander, Pope, Christopher E., Brittnacher, Mitchell J., Vo, Anh T., Weiss, Eli J., Hager, Kyle R., Martin, Bryan D., Leung, Daniel H., Heltshe, Sonya L., Borenstein, Elhanan, Miller, Samuel I., Hoffman, Lucas R.

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Clinical and Fecal Microbial Changes With Diet Therapy in Active Inflammatory Bowel Disease von Suskind, David L, Cohen, Stanley A, Brittnacher, Mitchell J, Wahbeh, Ghassan, Lee, Dale, Shaffer, Michele L, Braly, Kimberly, Hayden, Hillary S, Klein, Jani, Gold, Benjamin, Giefer, Matthew, Stallworth, Angela, Miller, Samuel I

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In vivo protein interaction network analysis reveals porin-localized antibiotic inactivation in Acinetobacter baumannii strain AB5075 von Wu, Xia, Chavez, Juan D., Schweppe, Devin K., Zheng, Chunxiang, Weisbrod, Chad R., Eng, Jimmy K., Murali, Ananya, Lee, Samuel A., Ramage, Elizabeth, Gallagher, Larry A., Kulasekara, Hemantha D., Edrozo, Mauna E., Kamischke, Cassandra N., Brittnacher, Mitchell J., Miller, Samuel I., Singh, Pradeep K., Manoil, Colin, Bruce, James E.

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underlying mechanism for the increased mutagenesis of lagging-strand genes in Bacillus subtilis von Million-Weaver, Samuel, Samadpour, Ariana N, Moreno-Habel, Daniela A, Nugent, Patrick, Brittnacher, Mitchell J, Weiss, Eli, Hayden, Hillary S, Miller, Samuel I, Liachko, Ivan, Merrikh, Houra

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Maintenance tobramycin primarily affects untargeted bacteria in the CF sputum microbiome von Nelson, Maria T, Wolter, Daniel J, Eng, Alexander, Weiss, Eli J, Vo, Anh T, Brittnacher, Mitchell J, Hayden, Hillary S, Ravishankar, Sumedha, Bautista, Gilbert, Ratjen, Anina, Blackledge, Marcella, McNamara, Sharon, Nay, Laura, Majors, Cheryl, Miller, Samuel I, Borenstein, Elhanan, Simon, Richard H, LiPuma, John J, Hoffman, Luke R

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Metagenomic evidence for taxonomic dysbiosis and functional imbalance in the gastrointestinal tracts of children with cystic fibrosis von Manor, Ohad, Levy, Roie, Pope, Christopher E., Hayden, Hillary S., Brittnacher, Mitchell J., Carr, Rogan, Radey, Matthew C., Hager, Kyle R., Heltshe, Sonya L., Ramsey, Bonnie W., Miller, Samuel I., Hoffman, Lucas R., Borenstein, Elhanan

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Adaptation of commensal proliferating Escherichia coli to the intestinal tract of young children with cystic fibrosis von Matamouros, Susana, Hayden, Hillary S., Hager, Kyle R., Brittnacher, Mitchell J., Lachance, Kristina, Weiss, Eli J., Pope, Christopher E., Imhaus, Anne-Flore, McNally, Colin P., Borenstein, Elhanan, Hoffman, Lucas R., Miller, Samuel I.

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Identification, Structure, and Function of a Novel Type VI Secretion Peptidoglycan Glycoside Hydrolase Effector-Immunity Pair von Whitney, John C., Chou, Seemay, Russell, Alistair B., Biboy, Jacob, Gardiner, Taylor E., Ferrin, Michael A., Brittnacher, Mitchell, Vollmer, Waldemar, Mougous, Joseph D.

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Infants with cystic fibrosis have altered fecal functional capacities with potential clinical and metabolic consequences von Eng, Alexander, Hayden, Hillary S, Pope, Christopher E, Brittnacher, Mitchell J, Vo, Anh T, Weiss, Eli J, Hager, Kyle R, Leung, Daniel H, Heltshe, Sonya L, Raftery, Daniel, Miller, Samuel I, Hoffman, Lucas R, Borenstein, Elhanan

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A Comprehensive Transposon Mutant Library of Francisella novicida, a Bioweapon Surrogate von Gallagher, Larry A., Ramage, Elizabeth, Jacobs, Michael A., Kaul, Rajinder, Brittnacher, Mitchell, Manoil, Colin

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GUTSS: An Alignment-Free Sequence Comparison Method for Use in Human Intestinal Microbiome and Fecal Microbiota Transplantation Analysis von Brittnacher, Mitchell J, Heltshe, Sonya L, Hayden, Hillary S, Radey, Matthew C, Weiss, Eli J, Damman, Christopher J, Zisman, Timothy L, Suskind, David L, Miller, Samuel I

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Escherichia coli Dysbiosis Correlates With Gastrointestinal Dysfunction in Children With Cystic Fibrosis von Hoffman, Lucas R., Pope, Christopher E., Hayden, Hillary S., Heltshe, Sonya, Levy, Roie, McNamara, Sharon, Jacobs, Michael A., Rohmer, Laurence, Radey, Matthew, Ramsey, Bonnie W., Brittnacher, Mitchell J., Borenstein, Elhanan, Miller, Samuel I.

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Burkholderia thailandensis as a Model System for the Study of the Virulence-Associated Type III Secretion System of Burkholderia pseudomallei von Haraga, Andrea, West, T. Eoin, Brittnacher, Mitchell J, Skerrett, Shawn J, Miller, Samuel I

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