A new model for prediction of the age of onset and penetrance for Huntington's disease based on CAG length von Langbehn, DR, Brinkman, RR, Falush, D, Paulsen, JS, Hayden, MR

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flowCore: a Bioconductor package for high throughput flow cytometry von Hahne, Florian, LeMeur, Nolwenn, Brinkman, Ryan R, Ellis, Byron, Haaland, Perry, Sarkar, Deepayan, Spidlen, Josef, Strain, Errol, Gentleman, Robert

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Hematopoietic Stem Cell Subtypes Expand Differentially during Development and Display Distinct Lymphopoietic Programs von Benz, Claudia, Copley, Michael R., Kent, David G., Wohrer, Stefan, Cortes, Adrian, Aghaeepour, Nima, Ma, Elaine, Mader, Heidi, Rowe, Keegan, Day, Christopher, Treloar, David, Brinkman, Ryan R., Eaves, Connie J.

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Data reduction for spectral clustering to analyze high throughput flow cytometry data von Zare, Habil, Shooshtari, Parisa, Gupta, Arvind, Brinkman, Ryan R

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flowClust: a Bioconductor package for automated gating of flow cytometry data von Lo, Kenneth, Hahne, Florian, Brinkman, Ryan R, Gottardo, Raphael

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flowDensity: reproducing manual gating of flow cytometry data by automated density-based cell population identification von Malek, Mehrnoush, Taghiyar, Mohammad Jafar, Chong, Lauren, Finak, Greg, Gottardo, Raphael, Brinkman, Ryan R

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The core autophagy protein ATG4B is a potential biomarker and therapeutic target in CML stem/progenitor cells von Rothe, Katharina, Lin, Hanyang, Kevin Lin, B.L., Leung, Amy, Wang, Hui Mi, Malekesmaeili, Mehrnoush, Brinkman, Ryan R., Forrest, Donna L., Gorski, Sharon M., Jiang, Xiaoyan

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Thinking Outside the Gate: Single-Cell Assessments in Multiple Dimensions von Kvistborg, Pia, Gouttefangeas, Cécile, Aghaeepour, Nima, Cazaly, Angelica, Chattopadhyay, Pratip K., Chan, Cliburn, Eckl, Judith, Finak, Greg, Hadrup, Sine Reker, Maecker, Holden T., Maurer, Dominik, Mosmann, Tim, Qiu, Peng, Scheuermann, Richard H., Welters, Marij J.P., Ferrari, Guido, Brinkman, Ryan R., Britten, Cedrik M.

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Rapid cell population identification in flow cytometry data von Aghaeepour, Nima, Nikolic, Radina, Hoos, Holger H., Brinkman, Ryan R.

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OntoFox: web-based support for ontology reuse von Xiang, Zuoshuang, Courtot, Mélanie, Brinkman, Ryan R, Ruttenberg, Alan, He, Yongqun

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Immune biomarkers predictive of respiratory viral infection in elderly nursing home residents von Johnstone, Jennie, Parsons, Robin, Botelho, Fernando, Millar, Jamie, McNeil, Shelly, Fulop, Tamas, McElhaney, Janet, Andrew, Melissa K, Walter, Stephen D, Devereaux, P J, Malekesmaeili, Mehrnoush, Brinkman, Ryan R, Mahony, James, Bramson, Jonathan, Loeb, Mark

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Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project von Taylor, Chris F, Field, Dawn, Sansone, Susanna-Assunta, Aerts, Jan, Apweiler, Rolf, Ashburner, Michael, Ball, Catherine A, Binz, Pierre-Alain, Bogue, Molly, Booth, Tim, Brazma, Alvis, Brinkman, Ryan R, Michael Clark, Adam, Deutsch, Eric W, Fiehn, Oliver, Fostel, Jennifer, Ghazal, Peter, Gibson, Frank, Gray, Tanya, Grimes, Graeme, Hancock, John M, Hardy, Nigel W, Hermjakob, Henning, Julian, Randall K, Kane, Matthew, Kettner, Carsten, Kinsinger, Christopher, Kolker, Eugene, Kuiper, Martin, Novère, Nicolas Le, Leebens-Mack, Jim, Lewis, Suzanna E, Lord, Phillip, Mallon, Ann-Marie, Marthandan, Nishanth, Masuya, Hiroshi, McNally, Ruth, Mehrle, Alexander, Morrison, Norman, Orchard, Sandra, Quackenbush, John, Reecy, James M, Robertson, Donald G, Rocca-Serra, Philippe, Rodriguez, Henry, Rosenfelder, Heiko, Santoyo-Lopez, Javier, Scheuermann, Richard H, Schober, Daniel, Smith, Barry, Snape, Jason, Stoeckert, Christian J, Tipton, Keith, Sterk, Peter, Untergasser, Andreas, Vandesompele, Jo, Wiemann, Stefan

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flowClean: Automated identification and removal of fluorescence anomalies in flow cytometry data von Fletez‐Brant, Kipper, Špidlen, Josef, Brinkman, Ryan R., Roederer, Mario, Chattopadhyay, Pratip K.

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Enhanced flowType/RchyOptimyx: a Bioconductor pipeline for discovery in high-dimensional cytometry data von O’Neill, Kieran, Jalali, Adrin, Aghaeepour, Nima, Hoos, Holger, Brinkman, Ryan R.

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DNA Methylation signatures underpinning blood neutrophil to lymphocyte ratio during first week of human life von Martino, David, Kresoje, Nina, Amenyogbe, Nelly, Ben-Othman, Rym, Cai, Bing, Lo, Mandy, Idoko, Olubukola, Odumade, Oludare A., Falsafi, Reza, Blimkie, Travis M., An, Andy, Shannon, Casey P., Montante, Sebastiano, Dhillon, Bhavjinder K., Diray-Arce, Joann, Ozonoff, Al, Smolen, Kinga K., Brinkman, Ryan R., McEnaney, Kerry, Angelidou, Asimenia, Richmond, Peter, Tebbutt, Scott J., Kampmann, Beate, Levy, Ofer, Hancock, Robert E. W., Lee, Amy H. Y., Kollmann, Tobias R.

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Single-cell profiling reveals a memory B cell-like subtype of follicular lymphoma with increased transformation risk von Wang, Xuehai, Nissen, Michael, Gracias, Deanne, Kusakabe, Manabu, Simkin, Guillermo, Jiang, Aixiang, Duns, Gerben, Sarkozy, Clementine, Hilton, Laura, Chavez, Elizabeth A., Segat, Gabriela C., Wong, Rachel, Kim, Jubin, Aoki, Tomohiro, Islam, Rashedul, May, Christina, Hung, Stacy, Tyshchenko, Kate, Brinkman, Ryan R., Hirst, Martin, Karsan, Aly, Freeman, Ciara, Sehn, Laurie H., Morin, Ryan D., Roth, Andrew J., Savage, Kerry J., Craig, Jeffrey W., Shah, Sohrab P., Steidl, Christian, Scott, David W., Weng, Andrew P.

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Coprescription of opioid and naloxone in office-based practice and emergency department settings in the United States von Sohn, M., Brinkman, R., Wellman, G.S.

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"Age Related Differences in the Biology of Chronic Graft-Versus-Host Disease After Hematopoietic Stem Cell Transplantation" von Cuvelier, Geoff D E, Li, Amanda, Drissler, Sibyl, Kariminia, Amina, Abdossamadi, Sayeh, Rozmus, Jacob, Chanoine, Jean-Pierre, Ng, Bernard, Mostafavi, Sara, Brinkman, Ryan R, Schultz, Kirk R

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MIFlowCyt: The minimum information about a flow cytometry experiment von Lee, Jamie A, Spidlen, Josef, Boyce, Keith, Cai, Jennifer, Crosbie, Nicholas, Dalphin, Mark, Furlong, Jeff, Gasparetto, Maura, Goldberg, Michael, Goralczyk, Elizabeth M, Hyun, Bill, Jansen, Kirstin, Kollmann, Tobias, Kong, Megan, Leif, Robert, McWeeney, Shannon, Moloshok, Thomas D, Moore, Wayne, Nolan, Garry, Nolan, John, Nikolich-Zugich, Janko, Parrish, David, Purcell, Barclay, Qian, Yu, Selvaraj, Biruntha, Smith, Clayton, Tchuvatkina, Olga, Wertheimer, Anne, Wilkinson, Peter, Wilson, Christopher, Wood, James, Zigon, Robert, Scheuermann, Richard H, Brinkman, Ryan R

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Publishing code is essential for reproducible flow cytometry bioinformatics von O'Neill, Kieran, Brinkman, Ryan R.

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