Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software von Sczyrba, Alexander, Hofmann, Peter, Belmann, Peter, Koslicki, David, Janssen, Stefan, Dröge, Johannes, Gregor, Ivan, Majda, Stephan, Fiedler, Jessika, Dahms, Eik, Bremges, Andreas, Fritz, Adrian, Garrido-Oter, Ruben, Jørgensen, Tue Sparholt, Shapiro, Nicole, Blood, Philip D, Gurevich, Alexey, Bai, Yang, Turaev, Dmitrij, DeMaere, Matthew Z, Chikhi, Rayan, Nagarajan, Niranjan, Quince, Christopher, Meyer, Fernando, Balvočiūtė, Monika, Hansen, Lars Hestbjerg, Sørensen, Søren J, Chia, Burton K H, Denis, Bertrand, Froula, Jeff L, Wang, Zhong, Egan, Robert, Don Kang, Dongwan, Cook, Jeffrey J, Deltel, Charles, Beckstette, Michael, Lemaitre, Claire, Peterlongo, Pierre, Rizk, Guillaume, Lavenier, Dominique, Wu, Yu-Wei, Singer, Steven W, Jain, Chirag, Strous, Marc, Klingenberg, Heiner, Meinicke, Peter, Barton, Michael D, Lingner, Thomas, Lin, Hsin-Hung, Liao, Yu-Chieh, Silva, Genivaldo Gueiros Z, Cuevas, Daniel A, Edwards, Robert A, Saha, Surya, Piro, Vitor C, Renard, Bernhard Y, Pop, Mihai, Klenk, Hans-Peter, Göker, Markus, Kyrpides, Nikos C, Woyke, Tanja, Vorholt, Julia A, Schulze-Lefert, Paul, Rubin, Edward M, Darling, Aaron E, Rattei, Thomas, McHardy, Alice C

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Assessing taxonomic metagenome profilers with OPAL von Meyer, Fernando, Bremges, Andreas, Belmann, Peter, Janssen, Stefan, McHardy, Alice C, Koslicki, David

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From Genomes to Phenotypes: Traitar, the Microbial Trait Analyzer von Weimann, Aaron, Mooren, Kyra, Frank, Jeremy, Pope, Phillip B, Bremges, Andreas, McHardy, Alice C

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Predicting antimicrobial resistance in Pseudomonas aeruginosa with machine learning‐enabled molecular diagnostics von Khaledi, Ariane, Weimann, Aaron, Schniederjans, Monika, Asgari, Ehsaneddin, Kuo, Tzu‐Hao, Oliver, Antonio, Cabot, Gabriel, Kola, Axel, Gastmeier, Petra, Hogardt, Michael, Jonas, Daniel, Mofrad, Mohammad RK, Bremges, Andreas, McHardy, Alice C, Häussler, Susanne

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CAMISIM: simulating metagenomes and microbial communities von Fritz, Adrian, Hofmann, Peter, Majda, Stephan, Dahms, Eik, Dröge, Johannes, Fiedler, Jessika, Lesker, Till R, Belmann, Peter, DeMaere, Matthew Z, Darling, Aaron E, Sczyrba, Alexander, Bremges, Andreas, McHardy, Alice C

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Characterisation of a stable laboratory co-culture of acidophilic nanoorganisms von Krause, Susanne, Bremges, Andreas, Münch, Philipp C., McHardy, Alice C., Gescher, Johannes

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A silent exonic SNP in kdm3a affects nucleic acids structure but does not regulate experimental autoimmune encephalomyelitis von Gillett, Alan, Bergman, Petra, Parsa, Roham, Bremges, Andreas, Giegerich, Robert, Jagodic, Maja

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Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants von Stolze, Yvonne, Bremges, Andreas, Rumming, Madis, Henke, Christian, Maus, Irena, Pühler, Alfred, Sczyrba, Alexander, Schlüter, Andreas

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Critical Assessment of Metagenome Interpretation: the second round of challenges von Meyer, Fernando, Fritz, Adrian, Deng, Zhi-Luo, Koslicki, David, Lesker, Till Robin, Gurevich, Alexey, Robertson, Gary, Alser, Mohammed, Antipov, Dmitry, Beghini, Francesco, Bertrand, Denis, Brito, Jaqueline J., Brown, C. Titus, Buchmann, Jan, Buluç, Aydin, Chen, Bo, Chikhi, Rayan, Clausen, Philip T. L. C., Dabrowski, Piotr Wojciech, Darling, Aaron E., Egan, Rob, Eskin, Eleazar, Georganas, Evangelos, Goltsman, Eugene, Gray, Melissa A., Hansen, Lars Hestbjerg, Hofmeyr, Steven, Huang, Pingqin, Irber, Luiz, Jia, Huijue, Jørgensen, Tue Sparholt, Kieser, Silas D., Klemetsen, Terje, Kola, Axel, Kolmogorov, Mikhail, Kwan, Jason, Lemaitre, Claire, Li, Chenhao, Limasset, Antoine, Malcher-Miranda, Fabio, Mangul, Serghei, Marcelino, Vanessa R., Marchet, Camille, Marijon, Pierre, Meleshko, Dmitry, Mende, Daniel R., Milanese, Alessio, Nagarajan, Niranjan, Nissen, Jakob, Nurk, Sergey, Oliker, Leonid, Paoli, Lucas, Peterlongo, Pierre, Piro, Vitor C., Porter, Jacob S., Rasmussen, Simon, Rees, Evan R., Reinert, Knut, Renard, Bernhard, Robertsen, Espen Mikal, Rosen, Gail L., Ruscheweyh, Hans-Joachim, Sarwal, Varuni, Segata, Nicola, Seiler, Enrico, Shi, Lizhen, Sun, Fengzhu, Sunagawa, Shinichi, Sørensen, Søren Johannes, Thomas, Ashleigh, Tong, Chengxuan, Trajkovski, Mirko, Tremblay, Julien, Uritskiy, Gherman, Vicedomini, Riccardo, Wang, Zhengyang, Wang, Ziye, Wang, Zhong, Warren, Andrew, Willassen, Nils Peder, Yelick, Katherine, You, Ronghui, Zeller, Georg, Zhao, Zhengqiao, Zhu, Shanfeng, Zhu, Jie, Garrido-Oter, Ruben, Gastmeier, Petra, Hacquard, Stephane, Häußler, Susanne, Khaledi, Ariane, Maechler, Friederike, Mesny, Fantin, Radutoiu, Simona, Schulze-Lefert, Paul, Smit, Nathiana, Strowig, Till, Bremges, Andreas, Sczyrba, Alexander, McHardy, Alice Carolyn

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Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants von Stolze, Yvonne, Bremges, Andreas, Maus, Irena, Pühler, Alfred, Sczyrba, Alexander, Schlüter, Andreas

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Critical Assessment of Metagenome Interpretation Enters the Second Round von Andreas Bremges, Alice C. McHardy

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CAMITAX: Taxon labels for microbial genomes von Bremges, Andreas, Fritz, Adrian, McHardy, Alice C

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Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant von Bremges, Andreas, Maus, Irena, Belmann, Peter, Eikmeyer, Felix, Winkler, Anika, Albersmeier, Andreas, Pühler, Alfred, Schlüter, Andreas, Sczyrba, Alexander

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Bioboxes: standardised containers for interchangeable bioinformatics software von Belmann, Peter, Dröge, Johannes, Bremges, Andreas, McHardy, Alice C, Sczyrba, Alexander, Barton, Michael D

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Metagenomics and CAZyme Discovery von Kunath, Benoit J., Bremges, Andreas, Weimann, Aaron, McHardy, Alice C., Pope, Phillip B.

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Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing von Wibberg, Daniel, Bremges, Andreas, Dammann-Kalinowski, Tanja, Maus, Irena, Igeño, Mª Isabel, Vogelsang, Ralph, König, Christoph, Luque-Almagro, Víctor M., Roldán, Mª Dolores, Sczyrba, Alexander, Moreno-Vivián, Conrado, Blasco, Rafael, Pühler, Alfred, Schlüter, Andreas

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Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344 von Wibberg, Daniel, Luque-Almagro, Víctor M, Igeño, Ma Isabel, Bremges, Andreas, Roldán, Ma Dolores, Merchán, Faustino, Sáez, Lara P, Guijo, Ma Isabel, Manso, Ma Isabel, Macías, Daniel, Cabello, Purificación, Becerra, Gracia, Ibáñez, Ma Isabel, Carmona, Ma Isabel, Escribano, Ma María Paz, Castillo, Francisco, Sczyrba, Alexander, Moreno-Vivián, Conrado, Blasco, Rafael, Pühler, Alfred, Schlüter, Andreas

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A Silent Exonic SNP in Kdm3a Affects Nucleic Acids Structure but Does Not Regulate Experimental Autoimmune Encephalomyelitis: e81912 von Gillett, Alan, Bergman, Petra, Parsa, Roham, Bremges, Andreas, Giegerich, Robert, Jagodic, Maja

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BACILLUS SUBTILIS STRAIN WITH POSITIVE INFLUENCE ON NEURODEGENERATIVE DISEASES SUCH AS ALZHEIMER'S DISEASE von TOM DIECK, Heike, PETER, Juliane, BREMGES, Andreas, PELZER, Stefan, GÜTTLER, Lisa, DARGATZ, Michelle

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Supporting data for "CAMITAX: Taxon labels for microbial genomes" von Andreas, Bremges, Adrian, Fritz, Alice, McHardy C

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