Genetic recombination is targeted towards gene promoter regions in dogs von Auton, Adam, Rui Li, Ying, Kidd, Jeffrey, Oliveira, Kyle, Nadel, Julie, Holloway, J Kim, Hayward, Jessica J, Cohen, Paula E, Greally, John M, Wang, Jun, Bustamante, Carlos D, Boyko, Adam R

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Comparison of village dog and wolf genomes highlights the role of the neural crest in dog domestication von Pendleton, Amanda L, Shen, Feichen, Taravella, Angela M, Emery, Sarah, Veeramah, Krishna R, Boyko, Adam R, Kidd, Jeffrey M

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Fine-Scale Resolution of Runs of Homozygosity Reveal Patterns of Inbreeding and Substantial Overlap with Recessive Disease Genotypes in Domestic Dogs von Sams, Aaron J, Boyko, Adam R

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Genetic structure and domestication history of the grape von Myles, Sean, Boyko, Adam R, Owens, Christopher L, Brown, Patrick J, Grassi, Fabrizio, Aradhya, Mallikarjuna K, Prins, Bernard, Reynolds, Andy, Chia, Jer-Ming, Ware, Doreen, Bustamante, Carlos D, Buckler, Edward S

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Complex disease and phenotype mapping in the domestic dog von Hayward, Jessica J., Castelhano, Marta G., Oliveira, Kyle C., Corey, Elizabeth, Balkman, Cheryl, Baxter, Tara L., Casal, Margret L., Center, Sharon A., Fang, Meiying, Garrison, Susan J., Kalla, Sara E., Korniliev, Pavel, Kotlikoff, Michael I., Moise, N. S., Shannon, Laura M., Simpson, Kenneth W., Sutter, Nathan B., Todhunter, Rory J., Boyko, Adam R.

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Molecular evidence for a single evolutionary origin of domesticated rice von Molina, Jeanmaire, Sikora, Martin, Garud, Nandita, Flowers, Jonathan M, Rubinstein, Samara, Reynolds, Andy, Huang, Pu, Jackson, Scott, Schaal, Barbara A, Bustamante, Carlos D, Boyko, Adam R, Purugganan, Michael D

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Population Variation Revealed High-Altitude Adaptation of Tibetan Mastiffs von Li, Yan, Wu, Dong-Dong, Boyko, Adam R., Wang, Guo-Dong, Wu, Shi-Fang, Irwin, David M., Zhang, Ya-Ping

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A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids von vonHoldt, Bridgett M, Pollinger, John P, Earl, Dent A, Knowles, James C, Boyko, Adam R, Parker, Heidi, Geffen, Eli, Pilot, Malgorzata, Jedrzejewski, Wlodzimierz, Jedrzejewska, Bogumila, Sidorovich, Vadim, Greco, Claudia, Randi, Ettore, Musiani, Marco, Kays, Roland, Bustamante, Carlos D, Ostrander, Elaine A, Novembre, John, Wayne, Robert K

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Complex population structure in African village dogs and its implications for inferring dog domestication history von Boyko, Adam R, Boyko, Ryan H, Boyko, Corin M, Parker, Heidi G, Castelhano, Marta, Corey, Liz, Degenhardt, Jeremiah D, Auton, Adam, Hedimbi, Marius, Kityo, Robert, Ostrander, Elaine A, Schoenebeck, Jeffrey, Todhunter, Rory J, Jones, Paul, Bustamante, Carlos D

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Early onset adult deafness in the Rhodesian Ridgeback dog is associated with an in-frame deletion in the EPS8L2 gene von Kawakami, Takeshi, Raghavan, Vandana, Ruhe, Alison L, Jensen, Meghan K, Milano, Ausra, Nelson, Thomas C, Boyko, Adam R

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Elucidating biogeographical patterns in Australian native canids using genome wide SNPs von Cairns, Kylie M, Shannon, Laura M, Koler-Matznick, Janice, Ballard, J William O, Boyko, Adam R

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Five genetic variants explain over 70% of hair coat pheomelanin intensity variation in purebred and mixed breed domestic dogs von Slavney, Andrea J, Kawakami, Takeshi, Jensen, Meghan K, Nelson, Thomas C, Sams, Aaron J, Boyko, Adam R

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A genome-wide association study of deafness in three canine breeds von Hayward, Jessica J, Kelly-Smith, Maria, Boyko, Adam R, Burmeister, Louise, De Risio, Luisa, Mellersh, Cathryn, Freeman, Julia, Strain, George M

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Assessing the evolutionary impact of amino acid mutations in the human genome von Boyko, Adam R, Williamson, Scott H, Indap, Amit R, Degenhardt, Jeremiah D, Hernandez, Ryan D, Lohmueller, Kirk E, Adams, Mark D, Schmidt, Steffen, Sninsky, John J, Sunyaev, Shamil R, White, Thomas J, Nielsen, Rasmus, Clark, Andrew G, Bustamante, Carlos D

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Imputation of canine genotype array data using 365 whole-genome sequences improves power of genome-wide association studies von Hayward, Jessica J, White, Michelle E, Boyle, Michael, Shannon, Laura M, Casal, Margret L, Castelhano, Marta G, Center, Sharon A, Meyers-Wallen, Vicki N, Simpson, Kenneth W, Sutter, Nathan B, Todhunter, Rory J, Boyko, Adam R

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Genetic mapping of distal femoral, stifle, and tibial radiographic morphology in dogs with cranial cruciate ligament disease von Healey, Eleni, Murphy, Rachel J, Hayward, Jessica J, Castelhano, Marta, Boyko, Adam R, Hayashi, Kei, Krotscheck, Ursula, Todhunter, Rory J

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Direct-to-consumer DNA testing of 6,000 dogs reveals 98.6-kb duplication associated with blue eyes and heterochromia in Siberian Huskies von Deane-Coe, Petra E, Chu, Erin T, Slavney, Andrea, Boyko, Adam R, Sams, Aaron J

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R-locus for roaned coat is associated with a tandem duplication in an intronic region of USH2A in dogs and also contributes to Dalmatian spotting von Kawakami, Takeshi, Jensen, Meghan K, Slavney, Andrea, Deane, Petra E, Milano, Ausra, Raghavan, Vandana, Ford, Brett, Chu, Erin T, Sams, Aaron J, Boyko, Adam R

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Artificial selection on brain-expressed genes during the domestication of dog von Li, Yan, Vonholdt, Bridgett M, Reynolds, Andy, Boyko, Adam R, Wayne, Robert K, Wu, Dong-Dong, Zhang, Ya-Ping

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Variation of BMP3 contributes to dog breed skull diversity von Schoenebeck, Jeffrey J, Hutchinson, Sarah A, Byers, Alexandra, Beale, Holly C, Carrington, Blake, Faden, Daniel L, Rimbault, Maud, Decker, Brennan, Kidd, Jeffrey M, Sood, Raman, Boyko, Adam R, Fondon, 3rd, John W, Wayne, Robert K, Bustamante, Carlos D, Ciruna, Brian, Ostrander, Elaine A

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