Widespread B cell perturbations in HIV-1 infection afflict naive and marginal zone B cells von Liechti, Thomas, Kadelka, Claus, Braun, Dominique L, Kuster, Herbert, Böni, Jürg, Robbiani, Melissa, Günthard, Huldrych F, Trkola, Alexandra

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Social Meets Molecular: Combining Phylogenetic and Latent Class Analyses to Understand HIV-1 Transmission in Switzerland von AVILA, Dorita, KEISER, Olivia, BONHOEFFER, Sebastian, GÜNTHARD, Huldrych F, STADLER, Tanja, SPYCHER, Ben D, EGGER, Matthias, KOUYOS, Roger, BONI, Jürg, YERLY, Sabine, KLIMKAIT, Thomas, VERNAZZA, Pietro L, AUBERT, Vincent, RAUCH, Andri

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Multifactorial seroprofiling dissects the contribution of pre-existing human coronaviruses responses to SARS-CoV-2 immunity von Abela, Irene A., Pasin, Chloé, Schwarzmüller, Magdalena, Epp, Selina, Sickmann, Michèle E., Schanz, Merle M., Rusert, Peter, Weber, Jacqueline, Schmutz, Stefan, Audigé, Annette, Maliqi, Liridona, Hunziker, Annika, Hesselman, Maria C., Niklaus, Cyrille R., Gottschalk, Jochen, Schindler, Eméry, Wepf, Alexander, Karrer, Urs, Wolfensberger, Aline, Rampini, Silvana K., Meyer Sauteur, Patrick M., Berger, Christoph, Huber, Michael, Böni, Jürg, Braun, Dominique L., Marconato, Maddalena, Manz, Markus G., Frey, Beat M., Günthard, Huldrych F., Kouyos, Roger D., Trkola, Alexandra

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Antibodies from convalescent plasma promote SARS-CoV-2 clearance in individuals with and without endogenous antibody response von Marconato, Maddalena, Abela, Irene A, Hauser, Anthony, Schwarzmüller, Magdalena, Katzensteiner, Rheliana, Braun, Dominique L, Epp, Selina, Audigé, Annette, Weber, Jacqueline, Rusert, Peter, Schindler, Eméry, Pasin, Chloé, West, Emily, Böni, Jürg, Kufner, Verena, Huber, Michael, Zaheri, Maryam, Schmutz, Stefan, Frey, Beat M, Kouyos, Roger D, Günthard, Huldrych F, Manz, Markus G, Trkola, Alexandra

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Determinants of HIV-1 broadly neutralizing antibody induction von Rusert, Peter, Kouyos, Roger D, Kadelka, Claus, Ebner, Hanna, Schanz, Merle, Huber, Michael, Braun, Dominique L, Hozé, Nathanael, Scherrer, Alexandra, Magnus, Carsten, Weber, Jacqueline, Uhr, Therese, Cippa, Valentina, Thorball, Christian W, Kuster, Herbert, Cavassini, Matthias, Bernasconi, Enos, Hoffmann, Matthias, Calmy, Alexandra, Battegay, Manuel, Rauch, Andri, Yerly, Sabine, Aubert, Vincent, Klimkait, Thomas, Böni, Jürg, Fellay, Jacques, Regoes, Roland R, Günthard, Huldrych F, Trkola, Alexandra

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Determinants of HIV-1 reservoir size and long-term dynamics during suppressive ART von Bachmann, Nadine, von Siebenthal, Chantal, Vongrad, Valentina, Turk, Teja, Neumann, Kathrin, Beerenwinkel, Niko, Bogojeska, Jasmina, Fellay, Jaques, Roth, Volker, Kok, Yik Lim, Thorball, Christian W., Borghesi, Alessandro, Parbhoo, Sonali, Wieser, Mario, Böni, Jürg, Perreau, Matthieu, Klimkait, Thomas, Yerly, Sabine, Battegay, Manuel, Rauch, Andri, Hoffmann, Matthias, Bernasconi, Enos, Cavassini, Matthias, Kouyos, Roger D., Günthard, Huldrych F., Metzner, Karin J.

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A Treatment-as-Prevention Trial to Eliminate Hepatitis C Among Men Who Have Sex With Men Living With Human Immunodeficiency Virus (HIV) in the Swiss HIV Cohort Study von Braun, Dominique L., Hampel, Benjamin, Ledergerber, Bruno, Grube, Christina, Nguyen, Huyen, Kunzler-Heule, Patrizia, Shah, Cyril, Salazar-Vizcaya, Luisa, Conen, Anna, Flepp, Markus, Stockle, Marcel, Beguelin, Charles, Schmid, Patrick, Rougemont, Mathieu, Delaloye, Julie, Bernasconi, Enos, Nicca, Dunja, Boni, Jurg, Rauch, Andri, Kouyos, Roger D., Gunthard, Huldrych F., Fehr, Jan S.

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Metagenomic sequencing complements routine diagnostics in identifying viral pathogens in lung transplant recipients with unknown etiology of respiratory infection von Lewandowska, Dagmara W, Schreiber, Peter W, Schuurmans, Macé M, Ruehe, Bettina, Zagordi, Osvaldo, Bayard, Cornelia, Greiner, Michael, Geissberger, Fabienne D, Capaul, Riccarda, Zbinden, Andrea, Böni, Jürg, Benden, Christian, Mueller, Nicolas J, Trkola, Alexandra, Huber, Michael

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Sustained Effect on Hepatitis C Elimination Among Men Who Have Sex With Men in the Swiss HIV Cohort Study: A Systematic Re-Screening for Hepatitis C RNA Two Years Following a Natio... von Kusejko, Katharina, Salazar-Vizcaya, Luisa, Shah, Cyril, Stöckle, Marcel, Béguelin, Charles, Schmid, Patrick, Ongaro, Marie, Darling, Katherine, Bernasconi, Enos, Rauch, Andri, Kouyos, Roger D, Günthard, Huldrych F, Böni, Jürg, Fehr, Jan S, Braun, Dominique L

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Persistence of transmitted HIV-1 drug resistance mutations associated with fitness costs and viral genetic backgrounds von Yang, Wan-Lin, Kouyos, Roger D, Böni, Jürg, Yerly, Sabine, Klimkait, Thomas, Aubert, Vincent, Scherrer, Alexandra U, Shilaih, Mohaned, Hinkley, Trevor, Petropoulos, Christos, Bonhoeffer, Sebastian, Günthard, Huldrych F

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Inferring epidemic contact structure from phylogenetic trees von Leventhal, Gabriel E, Kouyos, Roger, Stadler, Tanja, Wyl, Viktor von, Yerly, Sabine, Böni, Jürg, Cellerai, Cristina, Klimkait, Thomas, Günthard, Huldrych F, Bonhoeffer, Sebastian

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MinVar: A rapid and versatile tool for HIV-1 drug resistance genotyping by deep sequencing von Huber, Michael, Metzner, Karin J., Geissberger, Fabienne D., Shah, Cyril, Leemann, Christine, Klimkait, Thomas, Böni, Jürg, Trkola, Alexandra, Zagordi, Osvaldo

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Systematic screening of viral and human genetic variation identifies antiretroviral resistance and immune escape link von Nguyen, Huyen, Thorball, Christian Wandell, Fellay, Jacques, Boni, Jurg, Yerly, Sabine, Perreau, Matthieu, Hirsch, Hans H., Kusejko, Katharina, Thurnheer, Maria Christine, Battegay, Manuel, Cavassini, Matthias, Kahlert, Christian R., Bernasconi, Enos, Gunthard, Huldrych F., Kouyos, Roger D., Study, Swiss Hiv Cohort

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Heritability of the HIV-1 reservoir size and decay under long-term suppressive ART von Wan, Chenjie, Bachmann, Nadine, Mitov, Venelin, Blanquart, François, Céspedes, Susana Posada, Turk, Teja, Neumann, Kathrin, Beerenwinkel, Niko, Bogojeska, Jasmina, Fellay, Jacques, Roth, Volker, Böni, Jürg, Perreau, Matthieu, Klimkait, Thomas, Yerly, Sabine, Battegay, Manuel, Walti, Laura, Calmy, Alexandra, Vernazza, Pietro, Bernasconi, Enos, Cavassini, Matthias, Metzner, Karin J., Günthard, Huldrych F., Kouyos, Roger D.

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Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics von Kühnert, Denise, Kouyos, Roger, Shirreff, George, Pečerska, Jūlija, Scherrer, Alexandra U, Böni, Jürg, Yerly, Sabine, Klimkait, Thomas, Aubert, Vincent, Günthard, Huldrych F, Stadler, Tanja, Bonhoeffer, Sebastian

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Cross-protective HCoV immunity reduces symptom development during SARS-CoV-2 infection von Abela, Irene A, Schwarzmüller, Magdalena, Ulyte, Agne, Radtke, Thomas, Haile, Sarah R, Ammann, Priska, Raineri, Alessia, Rueegg, Sonja, Epp, Selina, Berger, Christoph, Böni, Jürg, Manrique, Amapola, Audigé, Annette, Huber, Michael, Schreiber, Peter W, Scheier, Thomas, Fehr, Jan, Weber, Jacqueline, Rusert, Peter, Günthard, Huldrych F, Kouyos, Roger D, Puhan, Milo A, Kriemler, Susi, Trkola, Alexandra, Pasin, Chloé

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Importance of an Early HIV Antibody Differentiation Immunoassay for Detection of Dual Infection with HIV-1 and HIV-2 von Zbinden, Andrea, Dürig, Roland, Shah, Cyril, Böni, Jürg, Schüpbach, Jörg

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Does respiratory co-infection facilitate dispersal of SARS-CoV-2? investigation of a super-spreading event in an open-space office von Weissberg, Dana, Boni, Jurg, Rampini, Silvana K., Kufner, Verena, Zaheri, Maryam, Schreiber, Peter W., Abela, Irene A., Huber, Michael, Sax, Hugo, Wolfensberger, Aline

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Ambiguous Nucleotide Calls From Population-based Sequencing of HIV-1 are a Marker for Viral Diversity and the Age of Infection von Kouyos, Roger D., von Wyl, Viktor, Yerly, Sabine, Böni, Jürg, Rieder, Philip, Joos, Beda, Taffé, Patrick, Shah, Cyril, Bürgisser, Philippe, Klimkait, Thomas, Weber, Rainer, Hirschel, Bernard, Cavassini, Matthias, Rauch, Andri, Battegay, Manuel, Vernazza, Pietro L., Bernasconi, Enos, Ledergerber, Bruno, Bonhoeffer, Sebastian, Günthard, Huldrych F.

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Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples von Lewandowska, Dagmara W, Zagordi, Osvaldo, Geissberger, Fabienne-Desirée, Kufner, Verena, Schmutz, Stefan, Böni, Jürg, Metzner, Karin J, Trkola, Alexandra, Huber, Michael

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