Unbiased atomistic insight in the competing nucleation mechanisms of methane hydrates von Arjun, Berendsen, Thom A., Bolhuis, Peter G.

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Allostery in Its Many Disguises: From Theory to Applications von Wodak, Shoshana J., Paci, Emanuele, Dokholyan, Nikolay V., Berezovsky, Igor N., Horovitz, Amnon, Li, Jing, Hilser, Vincent J., Bahar, Ivet, Karanicolas, John, Stock, Gerhard, Hamm, Peter, Stote, Roland H., Eberhardt, Jerome, Chebaro, Yassmine, Dejaegere, Annick, Cecchini, Marco, Changeux, Jean-Pierre, Bolhuis, Peter G., Vreede, Jocelyne, Faccioli, Pietro, Orioli, Simone, Ravasio, Riccardo, Yan, Le, Brito, Carolina, Wyart, Matthieu, Gkeka, Paraskevi, Rivalta, Ivan, Palermo, Giulia, McCammon, J. Andrew, Panecka-Hofman, Joanna, Wade, Rebecca C., Di Pizio, Antonella, Niv, Masha Y., Nussinov, Ruth, Tsai, Chung-Jung, Jang, Hyunbum, Padhorny, Dzmitry, Kozakov, Dima, McLeish, Tom

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Role of the prestructured surface cloud in crystal nucleation von Lechner, Wolfgang, Dellago, Christoph, Bolhuis, Peter G

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Optimizing molecular potential models by imposing kinetic constraints with path reweighting von Bolhuis, Peter G., Brotzakis, Z. Faidon, Keller, Bettina G.

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Elucidating the Locking Mechanism of Peptides onto Growing Amyloid Fibrils through Transition Path Sampling von Schor, Marieke, Vreede, Jocelyne, Bolhuis, Peter G.

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OpenPathSampling: A Python Framework for Path Sampling Simulations. 1. Basics von Swenson, David W. H, Prinz, Jan-Hendrik, Noe, Frank, Chodera, John D, Bolhuis, Peter G

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Rotational diffusion affects the dynamical self-assembly pathways of patchy particles von Newton, Arthur C., Groenewold, Jan, Kegel, Willem K., Bolhuis, Peter G.

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Multiscale simulations of anisotropic particles combining molecular dynamics and Green’s function reaction dynamics von Vijaykumar, Adithya, Ouldridge, Thomas E., ten Wolde, Pieter Rein, Bolhuis, Peter G.

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Transition-Path Sampling of β-Hairpin Folding von Bolhuis, Peter G.

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Reaction coordinates, one-dimensional Smoluchowski equations, and a test for dynamical self-consistency von Peters, Baron, Bolhuis, Peter G, Mullen, Ryan G, Shea, Joan-Emma

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Water structure and dynamics in the hydration layer of a type III anti-freeze protein von Brotzakis, Z Faidon, Voets, Ilja K, Bakker, Huib J, Bolhuis, Peter G

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Predicting the reaction coordinates of millisecond light-induced conformational changes in photoactive yellow protein von Vreede, Jocelyne, Juraszek, Jarek, Bolhuis, Peter G

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Interplay between structure and size in a critical crystal nucleus von MORONI, Daniele, TEN WOLDE, Pieter Rein, BOLHUIS, Peter G

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Equilibrium Kinetic Network of the Villin Headpiece in Implicit Solvent von Du, Weina, Bolhuis, Peter G.

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Temperature-sensitive colloidal phase behavior induced by critical Casimir forces von Dang, Minh Triet, Verde, Ana Vila, Nguyen, Van Duc, Bolhuis, Peter G, Schall, Peter

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Confinement-Induced States in the Folding Landscape of the Trp-cage Miniprotein von Marino, Kristen A, Bolhuis, Peter G

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Reaction coordinates for the crystal nucleation of colloidal suspensions extracted from the reweighted path ensemble von Lechner, Wolfgang, Dellago, Christoph, Bolhuis, Peter G.

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Nonlinear reaction coordinate analysis in the reweighted path ensemble von Lechner, Wolfgang, Rogal, Jutta, Juraszek, Jarek, Ensing, Bernd, Bolhuis, Peter G.

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Homogeneous nucleation of crystalline methane hydrate in molecular dynamics transition paths sampled under realistic conditions von Arjun, A., Bolhuis, Peter G.

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The Trigger Factor Chaperone Encapsulates and Stabilizes Partial Folds of Substrate Proteins von Singhal, Kushagra, Vreede, Jocelyne, Mashaghi, Alireza, Tans, Sander J, Bolhuis, Peter G

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