EPIC: A Tool to Estimate the Proportions of Different Cell Types from Bulk Gene Expression Data von Racle, Julien, Gfeller, David

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Immunedeconv: An R Package for Unified Access to Computational Methods for Estimating Immune Cell Fractions from Bulk RNA-Sequencing Data von Sturm, Gregor, Finotello, Francesca, List, Markus

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Cell-Type Enrichment Analysis of Bulk Transcriptomes Using xCell von Aran, Dvir

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HLA Typing: Methods and Protocols

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PHLAT: Inference of High-Resolution HLA Types from RNA and Whole Exome Sequencing von Bai, Yu, Wang, David, Fury, Wen

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Bioinformatics for Cancer Immunotherapy von Holtsträter, Christoph, Schrörs, Barbara, Bukur, Thomas, Löwer, Martin

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HLA Typing: Methods and Protocols von Boegel, Sebastian

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Role of Human Leukocyte Antigens (HLA) in Autoimmune Diseases von Bodis, Gergely, Toth, Victoria, Schwarting, Andreas

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The Past, Present, and Future of HLA Typing in Transplantation von Edgerly, Claire H., Weimer, Eric T.

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Allele Frequency Net Database von Gonzalez-Galarza, Faviel F., McCabe, Antony, Melo dos Santos, Eduardo J., Takeshita, Louise, Ghattaoraya, Gurpreet, Jones, Andrew R., Middleton, Derek

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Computational Deconvolution of Tumor-Infiltrating Immune Components with Bulk Tumor Gene Expression Data von Li, Bo, Li, Taiwen, Liu, Jun S., Liu, X. Shirley

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OpenVax: An Open-Source Computational Pipeline for Cancer Neoantigen Prediction von Kodysh, Julia, Rubinsteyn, Alex

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Cap Analysis of Gene Expression (CAGE): A Quantitative and Genome-Wide Assay of Transcription Start Sites von Morioka, Masaki Suimye, Kawaji, Hideya, Nishiyori-Sueki, Hiromi, Murata, Mitsuyoshi, Kojima-Ishiyama, Miki, Carninci, Piero, Itoh, Masayoshi

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Full-Length HLA Class I Genotyping with the MinION Nanopore Sequencer von Lang, Kathrin, Surendranath, Vineeth, Quenzel, Philipp, Schöfl, Gerhard, Schmidt, Alexander H., Lange, Vinzenz

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The SysteMHC Atlas: a Computational Pipeline, a Website, and a Data Repository for Immunopeptidomic Analyses von Shao, Wenguang, Caron, Etienne, Pedrioli, Patrick, Aebersold, Ruedi

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High-Resolution Full-Length HLA Typing Method Using Third Generation (Pac-Bio SMRT) Sequencing Technology von Ambardar, Sheetal, Gowda, Malali

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The IPD Databases: Cataloguing and Understanding Allele Variants von Abraham, Jashan P., Barker, Dominic J., Robinson, James, Maccari, Giuseppe, Marsh, Steven G. E.

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HLApers: HLA Typing and Quantification of Expression with Personalized Index von Aguiar, Vitor R. C., Masotti, Cibele, Camargo, Anamaria A., Meyer, Diogo

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HLA Typing from RNA Sequencing and Applications to Cancer von Orenbuch, Rose, Filip, Ioan, Rabadan, Raul

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Rapid High-Resolution Typing of Class I HLA Genes by Nanopore Sequencing von Liu, Chang, Berry, Rick

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