The GATK joint genotyping workflow is appropriate for calling variants in RNA-seq experiments von Brouard, Jean-Simon, Schenkel, Flavio, Marete, Andrew, Bissonnette, Nathalie

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Direct-fed microbial supplementation influences the bacteria community composition of the gastrointestinal tract of pre- and post-weaned calves von Fomenky, Bridget E., Do, Duy N., Talbot, Guylaine, Chiquette, Johanne, Bissonnette, Nathalie, Chouinard, Yvan P., Lessard, Martin, Ibeagha-Awemu, Eveline M.

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Genomic epidemiology of Mycobacterium avium subsp. paratuberculosis isolates from Canadian dairy herds provides evidence for multiple infection events von Byrne, Alexander, Ollier, Séverine, Tahlan, Kapil, Biet, Franck, Bissonnette, Nathalie

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Transcriptome Profiling of Bovine Macrophages Infected by Mycobacterium avium spp. paratuberculosis Depicts Foam Cell and Innate Immune Tolerance Phenotypes von Ariel, Olivier, Gendron, Daniel, Dudemaine, Pier-Luc, Gévry, Nicolas, Ibeagha-Awemu, Eveline M, Bissonnette, Nathalie

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Gene co-expression in response to Staphylococcus aureus infection reveals networks of genes with specific functions during bovine subclinical mastitis von Wang, Mengqi, Bissonnette, Nathalie, Laterrière, Mario, Dudemaine, Pier-Luc, Gagné, David, Roy, Jean-Philippe, Sirard, Marc-André, Ibeagha-Awemu, Eveline M.

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Genome-wide association analysis identified both RNA-seq and DNA variants associated to paratuberculosis in Canadian Holstein cattle 'in vitro' experimentally infected macrophages von Ariel, Olivier, Brouard, Jean-Simon, Marete, Andrew, Miglior, Filippo, Ibeagha-Awemu, Eveline, Bissonnette, Nathalie

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Short communication: Genetic association of variations in the osteopontin gene (SPP1) with lactation persistency in dairy cattle von Bissonnette, Nathalie

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Investigating in vivo Mycobacterium avium subsp. paratuberculosis microevolution and mixed strain infections von Byrne, Alexander, Bissonnette, Nathalie, Ollier, Séverine, Tahlan, Kapil

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DNA methylation haplotype block signatures responding to Staphylococcus aureus subclinical mastitis and association with production and health traits von Wang, Mengqi, Bissonnette, Nathalie, Laterrière, Mario, Dudemaine, Pier-Luc, Gagné, David, Roy, Jean-Philippe, Sirard, Marc-André, Ibeagha-Awemu, Eveline M

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Low-depth genotyping-by-sequencing (GBS) in a bovine population: strategies to maximize the selection of high quality genotypes and the accuracy of imputation von Brouard, Jean-Simon, Boyle, Brian, Ibeagha-Awemu, Eveline M, Bissonnette, Nathalie

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Methods for Detecting Mycobacterial Mixed Strain Infections-A Systematic Review von Byrne, Alexander Stephen, Goudreau, Alex, Bissonnette, Nathalie, Shamputa, Isdore Chola, Tahlan, Kapil

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Identification of Long Non-coding RNA Isolated From Naturally Infected Macrophages and Associated With Bovine Johne's Disease in Canadian Holstein Using a Combination of Neural Net... von Marete, Andrew, Ariel, Olivier, Ibeagha-Awemu, Eveline, Bissonnette, Nathalie

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Regionally Distinct Immune and Metabolic Transcriptional Responses in the Bovine Small Intestine and Draining Lymph Nodes During a Subclinical Mycobacterium avium subsp. paratuberc... von Ibeagha-Awemu, Eveline M, Bissonnette, Nathalie, Do, Duy N, Dudemaine, Pier-Luc, Wang, Mengqi, Facciuolo, Antonio, Griebel, Philip

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Functional analysis of bovine interleukin-10 receptor alpha in response to Mycobacterium avium subsp. paratuberculosis lysate using CRISPR/Cas9 von Mallikarjunappa, Sanjay, Shandilya, Umesh K, Sharma, Ankita, Lamers, Kristen, Bissonnette, Nathalie, Karrow, Niel A, Meade, Kieran G

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Administration of probiotics influences F4 (K88)-positive enterotoxigenic Escherichia coli attachment and intestinal cytokine expression in weaned pigs von Daudelin, Jean-François, Lessard, Martin, Beaudoin, Frédéric, Nadeau, Éric, Bissonnette, Nathalie, Boutin, Yvan, Brousseau, Jean-Philippe, Lauzon, Karoline, Morris Fairbrother, John

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Whole Genome Methylation Analysis Reveals Role of DNA Methylation in Cow's Ileal and Ileal Lymph Node Responses to Mycobacterium avium subsp. paratuberculosis Infection von Ibeagha-Awemu, Eveline M, Bissonnette, Nathalie, Bhattarai, Suraj, Wang, Mengqi, Dudemaine, Pier-Luc, McKay, Stephanie, Zhao, Xin

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Methylome and transcriptome data integration reveals potential roles of DNA methylation and candidate biomarkers of cow Streptococcus uberis subclinical mastitis von Wang, Mengqi, Bissonnette, Nathalie, Laterrière, Mario, Dudemaine, Pier-Luc, Gagné, David, Roy, Jean-Philippe, Zhao, Xin, Sirard, Marc-André, Ibeagha-Awemu, Eveline M

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Spermatozoal transcriptome profiling for bull sperm motility: a potential tool to evaluate semen quality von Bissonnette, Nathalie, Lévesque-Sergerie, Jean-Philippe, Thibault, Catherine, Boissonneault, Guylain

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A molecular analysis of the population of mRNA in bovine spermatozoa von Gilbert, Isabelle, Bissonnette, Nathalie, Boissonneault, Guylain, Vallée, Maud, Robert, Claude

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Association of genetic polymorphisms related to Johne's disease with estimated breeding values of Holstein sires for milk ELISA test scores von Mallikarjunappa, Sanjay, Schenkel, Flavio S, Brito, Luiz F, Bissonnette, Nathalie, Miglior, Filippo, Chesnais, Jacques, Lohuis, Michael, Meade, Kieran G, Karrow, Niel A

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