Candidate genes and genetic architecture of symbiotic and agronomic traits revealed by whole-genome, sequence-based association genetics in Medicago truncatula von Stanton-Geddes, John, Paape, Timothy, Epstein, Brendan, Briskine, Roman, Yoder, Jeremy, Mudge, Joann, Bharti, Arvind K, Farmer, Andrew D, Zhou, Peng, Denny, Roxanne, May, Gregory D, Erlandson, Stephanie, Yakub, Mohammed, Sugawara, Masayuki, Sadowsky, Michael J, Young, Nevin D, Tiffin, Peter

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Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula von Branca, Antoine, Paape, Timothy D, Zhou, Peng, Briskine, Roman, Farmer, Andrew D, Mudge, Joann, Bharti, Arvind K, Woodward, Jimmy E, May, Gregory D, Gentzbittel, Laurent, Ben, Cécile, Denny, Roxanne, Sadowsky, Michael J, Ronfort, Joëlle, Bataillon, Thomas, Young, Nevin D, Tiffin, Peter

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Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies von Sugawara, Masayuki, Epstein, Brendan, Badgley, Brian D, Unno, Tatsuya, Xu, Lei, Reese, Jennifer, Gyaneshwar, Prasad, Denny, Roxanne, Mudge, Joann, Bharti, Arvind K, Farmer, Andrew D, May, Gregory D, Woodward, Jimmy E, Médigue, Claudine, Vallenet, David, Lajus, Aurélie, Rouy, Zoé, Martinez-Vaz, Betsy, Tiffin, Peter, Young, Nevin D, Sadowsky, Michael J

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Physical and Genetic Structure of the Maize Genome Reflects Its Complex Evolutionary History von Wei, F, Nelson, W, Bharti, A.K, Engler, F, Butler, E, Kim, H.R, Goicoechea, J.L, Chen, M, Lee, S

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Population genomics of the facultatively mutualistic bacteria Sinorhizobium meliloti and S. medicae von Epstein, Brendan, Branca, Antoine, Mudge, Joann, Bharti, Arvind K, Briskine, Roman, Farmer, Andrew D, Sugawara, Masayuki, Young, Nevin D, Sadowsky, Michael J, Tiffin, Peter

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Sequence composition and genome organization of maize von Messing, J, Bharti, A.K, Karlowski, W.M, Gundlach, H, Kim, H.R, Yu, Y, Wei, F, Fuks, G, Soderlund, C.A, Mayer, K.F.X

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Prevalence of single nucleotide polymorphism among 27 diverse alfalfa genotypes as assessed by transcriptome sequencing von Li, Xuehui, Acharya, Ananta, Farmer, Andrew D, Crow, John A, Bharti, Arvind K, Kramer, Robin S, Wei, Yanling, Han, Yuanhong, Gou, Jiqing, May, Gregory D, Monteros, Maria J, Brummer, E Charles

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The expansion of the PRAME gene family in Eutheria von Chang, Ti-Cheng, Yang, Yang, Yasue, Hiroshi, Bharti, Arvind K, Retzel, Ernest F, Liu, Wan-Sheng

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ZNF280BY and ZNF280AY: autosome derived Y-chromosome gene families in Bovidae von Yang, Yang, Chang, Ti-Cheng, Yasue, Hiroshi, Bharti, Arvind K, Retzel, Ernest F, Liu, Wan-Sheng

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Genetic analysis of opaque2 modifier loci in quality protein maize von Holding, David R, Hunter, Brenda G, Chung, Taijoon, Gibbon, Bryan C, Ford, Clark F, Bharti, Arvind K, Messing, Joachim, Hamaker, Bruce R, Larkins, Brian A

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Uneven chromosome contraction and expansion in the maize genome von Bruggmann, Rémy, Bharti, Arvind K, Gundlach, Heidrun, Lai, Jinsheng, Young, Sarah, Pontaroli, Ana C, Wei, Fusheng, Haberer, Georg, Fuks, Galina, Du, Chunguang, Raymond, Christina, Estep, Matt C, Liu, Renyi, Bennetzen, Jeffrey L, Chan, Agnes P, Rabinowicz, Pablo D, Quackenbush, John, Barbazuk, W Brad, Wing, Rod A, Birren, Bruce, Nusbaum, Chad, Rounsley, Steve, Mayer, Klaus F X, Messing, Joachim

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Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers von Varshney, Rajeev K, Chen, Wenbin, Li, Yupeng, Bharti, Arvind K, Saxena, Rachit K, Schlueter, Jessica A, Donoghue, Mark T A, Azam, Sarwar, Fan, Guangyi, Whaley, Adam M, Farmer, Andrew D, Sheridan, Jaime, Iwata, Aiko, Tuteja, Reetu, Penmetsa, R Varma, Wu, Wei, Upadhyaya, Hari D, Yang, Shiaw-Pyng, Shah, Trushar, Saxena, K B, Michael, Todd, McCombie, W Richard, Yang, Bicheng, Zhang, Gengyun, Yang, Huanming, Wang, Jun, Spillane, Charles, Cook, Douglas R, May, Gregory D, Xu, Xun, Jackson, Scott A

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Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress von Belamkar, Vikas, Weeks, Nathan T, Bharti, Arvind K, Farmer, Andrew D, Graham, Michelle A, Cannon, Steven B

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Sorghum bicolor genome and the diversification of grasses von Paterson, Andrew H, Bowers, John E, Bruggmann, Remy, Dubchak, Inna, Grimwood, Jane, Gundlach, Heidrun, Haberer, Georg, Hellsten, Uffe, Mitros, Therese, Poliakov, Alexander, Schmutz, Jeremy, Spannagl, Manuel, Tang, Haibao, Wang, Xiyin, Wicker, Thomas, Ware, Doreen

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Genome-enabled insights into legume biology von Young, Nevin D, Bharti, Arvind K

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Characterization of the maize endosperm transcriptome and its comparison to the rice genome von Lai, Jinsheng, Dey, Nrisingha, Kim, Cheol-Soo, Bharti, Arvind K, Rudd, Stephen, Mayer, Klaus F X, Larkins, Brian A, Becraft, Philip, Messing, Joachim

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Phylogenetic Signal Variation in the Genomes of Medicago (Fabaceae) von Yoder, Jeremy B., Briskine, Roman, Mudge, Joann, Farmer, Andrew, Paape, Timothy, Steele, Kelly, Weiblen, George D., Bharti, Arvind K., Zhou, Peng, May, Gregory D., Young, Nevin D., Tiffin, Peter

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A Comprehensive Transcriptome Assembly of Pigeonpea (Cajanus cajan L.) using Sanger and Second-Generation Sequencing Platforms von Kudapa, Himabindu, Bharti, Arvind K., Cannon, Steven B., Farmer, Andrew D., Mulaosmanovic, Benjamin, Kramer, Robin, Bohra, Abhishek, Weeks, Nathan T., Crow, John A., Tuteja, Reetu, Shah, Trushar, Dutta, Sutapa, Gupta, Deepak K., Singh, Archana, Gaikwad, Kishor, Sharma, Tilak R., May, Gregory D., Singh, Nagendra K., Varshney, Rajeev K.

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Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains von Nelson, William, Luo, Meizhong, Ma, Jianxin, Estep, Matt, Estill, James, He, Ruifeng, Talag, Jayson, Sisneros, Nicholas, Kudrna, David, Kim, HyeRan, Ammiraju, Jetty S S, Collura, Kristi, Bharti, Arvind K, Messing, Joachim, Wing, Rod A, SanMiguel, Phillip, Bennetzen, Jeffrey L, Soderlund, Carol

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Comparative study of fluoride selective PVC based electrochemical sensors von Gupta, Vinod Kumar, Jain, Ajay K., Pal, Manoj K., Bharti, Arvind K.

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