Epigenetic plasticity and the hallmarks of cancer von Flavahan, William A., Gaskell, Elizabeth, Bernstein, Bradley E.

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Epigenetic Reprogramming in Cancer von Suvà, Mario L., Riggi, Nicolo, Bernstein, Bradley E.

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Charting histone modifications and the functional organization of mammalian genomes von Bernstein, Bradley E, Zhou, Vicky W, Goren, Alon

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Insulator dysfunction and oncogene activation in IDH mutant gliomas von Flavahan, William A., Drier, Yotam, Liau, Brian B., Gillespie, Shawn M., Venteicher, Andrew S., Stemmer-Rachamimov, Anat O., Suvà, Mario L., Bernstein, Bradley E.

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SAM Domain Polymerization Links Subnuclear Clustering of PRC1 to Gene Silencing von Isono, Kyoichi, Endo, Takaho A., Ku, Manching, Yamada, Daisuke, Suzuki, Rie, Sharif, Jafar, Ishikura, Tomoyuki, Toyoda, Tetsuro, Bernstein, Bradley E., Koseki, Haruhiko

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Combinatorial Patterning of Chromatin Regulators Uncovered by Genome-wide Location Analysis in Human Cells von Ram, Oren, Goren, Alon, Amit, Ido, Shoresh, Noam, Yosef, Nir, Ernst, Jason, Kellis, Manolis, Gymrek, Melissa, Issner, Robbyn, Coyne, Michael, Durham, Timothy, Zhang, Xiaolan, Donaghey, Julie, Epstein, Charles B., Regev, Aviv, Bernstein, Bradley E.

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Unravelling subclonal heterogeneity and aggressive disease states in TNBC through single-cell RNA-seq von Karaayvaz, Mihriban, Cristea, Simona, Gillespie, Shawn M., Patel, Anoop P., Mylvaganam, Ravindra, Luo, Christina C., Specht, Michelle C., Bernstein, Bradley E., Michor, Franziska, Ellisen, Leif W.

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Whole-genome chromatin profiling from limited numbers of cells using nano-ChIP-seq von Adli, Mazhar, Bernstein, Bradley E

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Single-Cell Transcriptomic Analysis of Primary and Metastatic Tumor Ecosystems in Head and Neck Cancer von Puram, Sidharth V., Tirosh, Itay, Parikh, Anuraag S., Patel, Anoop P., Yizhak, Keren, Gillespie, Shawn, Rodman, Christopher, Luo, Christina L., Mroz, Edmund A., Emerick, Kevin S., Deschler, Daniel G., Varvares, Mark A., Mylvaganam, Ravi, Rozenblatt-Rosen, Orit, Rocco, James W., Faquin, William C., Lin, Derrick T., Regev, Aviv, Bernstein, Bradley E.

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Genomic distribution and inter-sample variation of non-CpG methylation across human cell types von Ziller, Michael J, Müller, Fabian, Liao, Jing, Zhang, Yingying, Gu, Hongcang, Bock, Christoph, Boyle, Patrick, Epstein, Charles B, Bernstein, Bradley E, Lengauer, Thomas, Gnirke, Andreas, Meissner, Alexander

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A High-Throughput Chromatin Immunoprecipitation Approach Reveals Principles of Dynamic Gene Regulation in Mammals von Garber, Manuel, Yosef, Nir, Goren, Alon, Raychowdhury, Raktima, Thielke, Anne, Guttman, Mitchell, Robinson, James, Minie, Brian, Chevrier, Nicolas, Itzhaki, Zohar, Blecher-Gonen, Ronnie, Bornstein, Chamutal, Amann-Zalcenstein, Daniela, Weiner, Assaf, Friedrich, Dennis, Meldrim, James, Ram, Oren, Cheng, Christine, Gnirke, Andreas, Fisher, Sheila, Friedman, Nir, Wong, Bang, Bernstein, Bradley E., Nusbaum, Chad, Hacohen, Nir, Regev, Aviv, Amit, Ido

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Single-cell lineage analysis reveals genetic and epigenetic interplay in glioblastoma drug resistance von Eyler, Christine E, Matsunaga, Hironori, Hovestadt, Volker, Vantine, Samantha J, van Galen, Peter, Bernstein, Bradley E

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ASXL1 Mutations Promote Myeloid Transformation through Loss of PRC2-Mediated Gene Repression von Abdel-Wahab, Omar, Adli, Mazhar, LaFave, Lindsay M., Gao, Jie, Hricik, Todd, Shih, Alan H., Pandey, Suveg, Patel, Jay P., Chung, Young Rock, Koche, Richard, Perna, Fabiana, Zhao, Xinyang, Taylor, Jordan E., Park, Christopher Y., Carroll, Martin, Melnick, Ari, Nimer, Stephen D., Jaffe, Jacob D., Aifantis, Iannis, Bernstein, Bradley E., Levine, Ross L.

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Epigenome editing strategies for the functional annotation of CTCF insulators von Tarjan, Daniel R., Flavahan, William A., Bernstein, Bradley E.

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Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types von Finucane, Hilary K., Reshef, Yakir A., Anttila, Verneri, Slowikowski, Kamil, Gusev, Alexander, Byrnes, Andrea, Gazal, Steven, Loh, Po-Ru, Lareau, Caleb, Shoresh, Noam, Genovese, Giulio, Saunders, Arpiar, Macosko, Evan, Pollack, Samuela, Perry, John R. B., Buenrostro, Jason D., Bernstein, Bradley E., Raychaudhuri, Soumya, McCarroll, Steven, Neale, Benjamin M., Price, Alkes L.

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Genome-wide Chromatin State Transitions Associated with Developmental and Environmental Cues von Zhu, Jiang, Adli, Mazhar, Zou, James Y., Verstappen, Griet, Coyne, Michael, Zhang, Xiaolan, Durham, Timothy, Miri, Mohammad, Deshpande, Vikram, De Jager, Philip L., Bennett, David A., Houmard, Joseph A., Muoio, Deborah M., Onder, Tamer T., Camahort, Ray, Cowan, Chad A., Meissner, Alexander, Epstein, Charles B., Shoresh, Noam, Bernstein, Bradley E.

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DNA Sequence-Dependent Compartmentalization and Silencing of Chromatin at the Nuclear Lamina von Zullo, Joseph M., Demarco, Ignacio A., Piqué-Regi, Roger, Gaffney, Daniel J., Epstein, Charles B., Spooner, Chauncey J., Luperchio, Teresa R., Bernstein, Bradley E., Pritchard, Jonathan K., Reddy, Karen L., Singh, Harinder

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Transcriptional and Epigenetic Dynamics during Specification of Human Embryonic Stem Cells von Gifford, Casey A., Ziller, Michael J., Gu, Hongcang, Trapnell, Cole, Donaghey, Julie, Tsankov, Alexander, Shalek, Alex K., Kelley, David R., Shishkin, Alexander A., Issner, Robbyn, Zhang, Xiaolan, Coyne, Michael, Fostel, Jennifer L., Holmes, Laurie, Meldrim, Jim, Guttman, Mitchell, Epstein, Charles, Park, Hongkun, Kohlbacher, Oliver, Rinn, John, Gnirke, Andreas, Lander, Eric S., Bernstein, Bradley E., Meissner, Alexander

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Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma von Patel, Anoop P., Tirosh, Itay, Trombetta, John J., Shalek, Alex K., Gillespie, Shawn M., Wakimoto, Hiroaki, Cahill, Daniel P., Nahed, Brian V., Curry, William T., Martuza, Robert L., Louis, David N., Rozenblatt-Rosen, Orit, Suvà, Mario L., Regev, Aviv, Bernstein, Bradley E.

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Locus-specific editing of histone modifications at endogenous enhancers von Mendenhall, Eric M, Williamson, Kaylyn E, Reyon, Deepak, Zou, James Y, Ram, Oren, Joung, J Keith, Bernstein, Bradley E

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