DNA methylation loss in late-replicating domains is linked to mitotic cell division von Zhou, Wanding, Dinh, Huy Q., Ramjan, Zachary, Weisenberger, Daniel J., Nicolet, Charles M., Shen, Hui, Laird, Peter W., Berman, Benjamin P.

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Trapped Alkali-Metal Rydberg Qubit von Mei, Y, Li, Y, Nguyen, H, Berman, P R, Kuzmich, A

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Clinical and Hemodynamic Outcomes up to 7 Years After Transcatheter Pulmonary Valve Replacement in the US Melody Valve Investigational Device Exemption Trial von Cheatham, John P, Hellenbrand, William E, Zahn, Evan M, Jones, Thomas K, Berman, Darren P, Vincent, Julie A, McElhinney, Doff B

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Detecting cell-of-origin and cancer-specific methylation features of cell-free DNA from Nanopore sequencing von Katsman, Efrat, Orlanski, Shari, Martignano, Filippo, Fox-Fisher, Ilana, Shemer, Ruth, Dor, Yuval, Zick, Aviad, Eden, Amir, Petrini, Iacopo, Conticello, Silvestro G, Berman, Benjamin P

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Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules von Kelly, Theresa K, Liu, Yaping, Lay, Fides D, Liang, Gangning, Berman, Benjamin P, Jones, Peter A

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ELMER v.2: an R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles von Silva, Tiago C, Coetzee, Simon G, Gull, Nicole, Yao, Lijing, Hazelett, Dennis J, Noushmehr, Houtan, Lin, De-Chen, Berman, Benjamin P

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Functional annotation of colon cancer risk SNPs von Yao, Lijing, Tak, Yu Gyoung, Berman, Benjamin P., Farnham, Peggy J.

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Genomic and Epigenomic Heterogeneity of Hepatocellular Carcinoma von Lin, De-Chen, Mayakonda, Anand, Dinh, Huy Q, Huang, Pinbo, Lin, Lehang, Liu, Xiaoping, Ding, Ling-Wen, Wang, Jie, Berman, Benjamin P, Song, Er-Wei, Yin, Dong, Koeffler, H Phillip

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Spatial intratumoral heterogeneity and temporal clonal evolution in esophageal squamous cell carcinoma von Hao, Jia-Jie, Lin, De-Chen, Dinh, Huy Q, Mayakonda, Anand, Jiang, Yan-Yi, Chang, Chen, Jiang, Ye, Lu, Chen-Chen, Shi, Zhi-Zhou, Xu, Xin, Zhang, Yu, Cai, Yan, Wang, Jin-Wu, Zhan, Qi-Min, Wei, Wen-Qiang, Berman, Benjamin P, Wang, Ming-Rong, Koeffler, H Phillip

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FOXC1 Activates Smoothened-Independent Hedgehog Signaling in Basal-like Breast Cancer von Han, Bingchen, Qu, Ying, Jin, Yanli, Yu, Yi, Deng, Nan, Wawrowsky, Kolja, Zhang, Xiao, Li, Na, Bose, Shikha, Wang, Qiang, Sakkiah, Sugunadevi, Abrol, Ravinder, Jensen, Tor W., Berman, Benjamin P., Tanaka, Hisashi, Johnson, Jeffrey, Gao, Bowen, Hao, Jijun, Liu, Zhenqiu, Buttyan, Ralph, Ray, Partha S., Hung, Mien-Chie, Giuliano, Armando E., Cui, Xiaojiang

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Phase Matching in Lower Dimensions von Tamura, H., Nguyen, H., Berman, P. R., Kuzmich, A.

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Author Correction: CelFiE-ISH: a probabilistic model for multi-cell type deconvolution from single-molecule DNA methylation haplotypes von Unterman, Irene, Avrahami, Dana, Katsman, Efrat, Triche, Jr, Timothy J, Glaser, Benjamin, Berman, Benjamin P

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Clinical and cardiac characteristics of COVID‐19 mortalities in a diverse New York City Cohort von Abrams, Mark P., Wan, Elaine Y., Waase, Marc P., Morrow, John P., Dizon, Jose M., Yarmohammadi, Hirad, Berman, Jeremy P., Rubin, Geoffrey A., Kushnir, Alexander, Poterucha, Timothy J., Elias, Pierre A., Rubin, David A., Ehlert, Frederick, Biviano, Angelo, Uriel, Nir, Garan, Hasan, Saluja, Deepak

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Co-activation of super-enhancer-driven CCAT1 by TP63 and SOX2 promotes squamous cancer progression von Jiang, Yuan, Jiang, Yan-Yi, Xie, Jian-Jun, Mayakonda, Anand, Hazawa, Masaharu, Chen, Li, Xiao, Jin-Fen, Li, Chun-Quan, Huang, Mo-Li, Ding, Ling-Wen, Sun, Qiao-Yang, Xu, Liang, Kanojia, Deepika, Jeitany, Maya, Deng, Jian-Wen, Liao, Lian-Di, Soukiasian, Harmik J., Berman, Benjamin P., Hao, Jia-Jie, Xu, Li-Yan, Li, En-Min, Wang, Ming-Rong, Bi, Xin-Gang, Lin, De-Chen, Koeffler, H. Phillip

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Identification of distinct mutational patterns and new driver genes in oesophageal squamous cell carcinomas and adenocarcinomas von Lin, De-Chen, Dinh, Huy Q, Xie, Jian-Jun, Mayakonda, Anand, Silva, Tiago Chedraoui, Jiang, Yan-Yi, Ding, Ling-Wen, He, Jian-Zhong, Xu, Xiu-E, Hao, Jia-Jie, Wang, Ming-Rong, Li, Chunquan, Xu, Li-Yan, Li, En-Min, Berman, Benjamin P, Phillip Koeffler, H

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Understanding the complex chromatin dynamics in primary human neutrophils during PMA-induced NET formation von Atteberry, Brandi, Berman, Benjamin P., Kelly, Theresa K., Cayford, Justin

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Gender-specific postnatal demethylation and establishment of epigenetic memory von Reizel, Yitzhak, Spiro, Adam, Sabag, Ofra, Skversky, Yael, Hecht, Merav, Keshet, Ilana, Berman, Benjamin P, Cedar, Howard

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Functional enhancers at the gene-poor 8q24 cancer-linked locus von Jia, Li, Landan, Gilad, Pomerantz, Mark, Jaschek, Rami, Herman, Paula, Reich, David, Yan, Chunli, Khalid, Omar, Kantoff, Phil, Oh, William, Manak, J Robert, Berman, Benjamin P, Henderson, Brian E, Frenkel, Baruch, Haiman, Christopher A, Freedman, Matthew, Tanay, Amos, Coetzee, Gerhard A

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Master transcription factors form interconnected circuitry and orchestrate transcriptional networks in oesophageal adenocarcinoma von Chen, Li, Huang, Moli, Plummer, Jasmine, Pan, Jian, Jiang, Yan Yi, Yang, Qian, Silva, Tiago Chedraoui, Gull, Nicole, Chen, Stephanie, Ding, Ling Wen, An, Omer, Yang, Henry, Cheng, Yulan, Said, Jonathan W, Doan, Ngan, Dinjens, Winand NM, Waters, Kevin M, Tuli, Richard, Gayther, Simon A, Klempner, Samuel J, Berman, Benjamin P, Meltzer, Stephen J, Lin, De-Chen, Koeffler, H Phillip

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Targetable BET proteins- and E2F1-dependent transcriptional program maintains the malignancy of glioblastoma von Xu, Liang, Chen, Ye, Mayakonda, Anand, Koh, Lynnette, Chong, Yuk Kien, Buckley, Dennis L., Sandanaraj, Edwin, Lim, See Wee, Lin, Ruby Yu-Tong, Ke, Xin-Yu, Huang, Mo-Li, Chen, Jianxiang, Sun, Wendi, Wang, Ling-Zhi, Goh, Boon Cher, Dinh, Huy Q., Kappei, Dennis, Winter, Georg E., Ding, Ling-Wen, Ang, Beng Ti, Berman, Benjamin P., Bradner, James E., Tang, Carol, Koeffler, H. Phillip

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