GROMACS: Fast, flexible, and free von Van Der Spoel, David, Lindahl, Erik, Hess, Berk, Groenhof, Gerrit, Mark, Alan E., Berendsen, Herman J. C.

Volltext

Collective protein dynamics in relation to function von Berendsen, Herman JC, Hayward, Steven

Volltext

LINCS: A linear constraint solver for molecular simulations von Hess, Berk, Bekker, Henk, Berendsen, Herman J. C., Fraaije, Johannes G. E. M.

Volltext

Improving efficiency of large time-scale molecular dynamics simulations of hydrogen-rich systems von Feenstra, K. Anton, Hess, Berk, Berendsen, Herman J. C.

Volltext

A systematic study of water models for molecular simulation: Derivation of water models optimized for use with a reaction field von van der Spoel, David, van Maaren, Paul J., Berendsen, Herman J. C.

Volltext

A Molecular Dynamics Study of the Pores Formed by Escherichia coli OmpF Porin in a Fully Hydrated Palmitoyloleoylphosphatidylcholine Bilayer von Tieleman, D.P., Berendsen, H.J.C.

Volltext

GROMACS: A message-passing parallel molecular dynamics implementation von Berendsen, H.J.C., van der Spoel, D., van Drunen, R.

Volltext

Computer Simulation of Urea−Water Mixtures:  A Test of Force Field Parameters for Use in Biomolecular Simulation von Smith, Lorna J, Berendsen, Herman J. C, van Gunsteren, Wilfred F

Volltext

Molecular Dynamics Simulations of Dodecylphosphocholine Micelles at Three Different Aggregate Sizes:  Micellar Structure and Chain Relaxation von Tieleman, D. P, van der Spoel, D, Berendsen, H. J. C

Volltext

Essential dynamics of proteins von Amadei, Andrea, Linssen, Antonius B. M., Berendsen, Herman J. C.

Volltext

Molecular dynamics simulations as a tool for improving protein stability von Pikkemaat, Mariël G., Linssen, Antonius B.M., Berendsen, Herman J.C., Janssen, Dick B.

Volltext

An application of flexible constraints in Monte Carlo simulations of the isobaric--isothermal ensemble of liquid water and ice Ih with the polarizable and flexible mobile charge de... von Saint-Martin, Humberto, Hess, Berk, Berendsen, Herman J C

Volltext

Dynamic Conformations of Flavin Adenine Dinucleotide:  Simulated Molecular Dynamics of the Flavin Cofactor Related to the Time-Resolved Fluorescence Characteristics von van den Berg, Petra A. W, Feenstra, K. Anton, Mark, Alan E, Berendsen, Herman J. C, Visser, Antonie J. W. G

Volltext

Model-free methods of analyzing domain motions in proteins from simulation: A comparison of normal mode analysis and molecular dynamics simulation of lysozyme von Hayward, Steven, Kitao, Akio, Berendsen, Herman J.C.

Volltext

Voltage-Dependent Insertion of Alamethicin at Phospholipid/Water and Octane/Water Interfaces von Tieleman, D.P., Berendsen, H.J.C., Sansom, M.S.P.

Volltext

Alamethicin Helices in a Bilayer and in Solution: Molecular Dynamics Simulations von Tieleman, D. Peter, Sansom, Mark S.P., Berendsen, Herman J.C.

Volltext

An Alamethicin Channel in a Lipid Bilayer: Molecular Dynamics Simulations von Peter Tieleman, D., Berendsen, Herman J.C., Sansom, Mark S.P.

Volltext

Computer Simulation of Molecular Dynamics: Methodology, Applications, and Perspectives in Chemistry von van Gunsteren, Wilfred F., Berendsen, Herman J. C.

Volltext

A mobile charge densities in harmonic oscillators (MCDHO) molecular model for numerical simulations: The water–water interaction von Saint-Martin, Humberto, Hernández-Cobos, Jorge, Bernal-Uruchurtu, Margarita I., Ortega-Blake, Iván, Berendsen, Herman J. C.

Volltext

Bioinformatics. Reality simulation--observe while it happens von Berendsen, H J

Volltext