The arabidopsis information resource: Making and mining the "gold standard" annotated reference plant genome von Berardini, Tanya Z., Reiser, Leonore, Li, Donghui, Mezheritsky, Yarik, Muller, Robert, Strait, Emily, Huala, Eva

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The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools von Lamesch, Philippe, Berardini, Tanya Z., Li, Donghui, Swarbreck, David, Wilks, Christopher, Sasidharan, Rajkumar, Muller, Robert, Dreher, Kate, Alexander, Debbie L., Garcia-Hernandez, Margarita, Karthikeyan, Athikkattuvalasu S., Lee, Cynthia H., Nelson, William D., Ploetz, Larry, Singh, Shanker, Wensel, April, Huala, Eva

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Cyclophilin 40 is required for microRNA activity in Arabidopsis von Smith, Michael R, Willmann, Matthew R, Wu, Gang, Berardini, Tanya Z, Möller, Barbara, Weijers, Dolf, Poethig, R. Scott

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Functional annotation of the Arabidopsis genome using controlled vocabularies von Berardini, T.Z, Mundodi, S, Reiser, L, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, L.A, Yoon, J, Doyle, A, Lander, G

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The Arabidopsis Information Resource in 2024 von Reiser, Leonore, Bakker, Erica, Subramaniam, Sabarinath, Chen, Xingguo, Sawant, Swapnil, Khosa, Kartik, Prithvi, Trilok, Berardini, Tanya Z

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Sustainable funding for biocuration: The Arabidopsis Information Resource (TAIR) as a case study of a subscription-based funding model von Reiser, Leonore, Berardini, Tanya Z, Li, Donghui, Muller, Robert, Strait, Emily M, Li, Qian, Mezheritsky, Yarik, Vetushko, Andrey, Huala, Eva

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HASTY, the Arabidopsis ortholog of exportin 5/MSN5, regulates phase change and morphogenesis von Bollman, Krista M, Aukerman, Milo J, Park, Mee-Yeon, Hunter, Christine, Berardini, Tanya Z, Poethig, R Scott

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The representation of heart development in the gene ontology von Khodiyar, Varsha K., Hill, David P., Howe, Doug, Berardini, Tanya Z., Tweedie, Susan, Talmud, Philippa J., Breckenridge, Ross, Bhattarcharya, Shoumo, Riley, Paul, Scambler, Peter, Lovering, Ruth C.

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Arabidopsis Information Resource (TAIR): gene structure and function annotation von Swarbreck, David, Wilks, Christopher, Lamesch, Philippe, Berardini, Tanya Z, Garcia-Hernandez, Margarita, Foerster, Hartmut, Li, Donghui, Meyer, Tom, Muller, Robert, Ploetz, Larry, Radenbaugh, Amie, Singh, Shanker, Swing, Vanessa, Tissier, Christophe, Zhang, Peifen, Huala, Eva

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plant ontology as a tool for comparative plant anatomy and genomic analyses von Cooper, Laurel, Walls, Ramona L, Elser, Justin, Gandolfo, Maria A, Stevenson, Dennis W, Smith, Barry, Preece, Justin, Athreya, Balaji, Mungall, Christopher J, Rensing, Stefan, Hiss, Manuel, Lang, Daniel, Reski, Ralf, Berardini, Tanya Z, Li, Dongjui, Huala, Eva, Schaeffer, Mary, Menda, Naama, Arnaud, Elizabeth, Shrestha, Rosemary, Yamazaki, Yukiko, Jaiswal, Pankaj

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Representing ontogeny through ontology: A developmental biologist's guide to the gene ontology von Hill, David P., Berardini, Tanya Z., Howe, Douglas G., Van Auken, Kimberly M.

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The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community von Rhee, Seung Yon, Beavis, William, Berardini, Tanya Z., Chen, Guanghong, Dixon, David, Doyle, Aisling, Garcia-Hernandez, Margarita, Huala, Eva, Lander, Gabriel, Montoya, Mary, Miller, Neil, Mueller, Lukas A., Mundodi, Suparna, Reiser, Leonore, Tacklind, Julie, Weems, Dan C., Wu, Yihe, Xu, Iris, Yoo, Daniel, Yoon, Jungwon, Zhang, Peifen

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Cross-product extensions of the Gene Ontology von Mungall, Christopher J., Bada, Michael, Berardini, Tanya Z., Deegan, Jennifer, Ireland, Amelia, Harris, Midori A., Hill, David P., Lomax, Jane

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Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology von Hill, David P, Adams, Nico, Bada, Mike, Batchelor, Colin, Berardini, Tanya Z, Dietze, Heiko, Drabkin, Harold J, Ennis, Marcus, Foulger, Rebecca E, Harris, Midori A, Hastings, Janna, Kale, Namrata S, de Matos, Paula, Mungall, Christopher J, Owen, Gareth, Roncaglia, Paola, Steinbeck, Christoph, Turner, Steve, Lomax, Jane

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Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium von Clarke, Jennifer L, Cooper, Laurel D, Poelchau, Monica F, Berardini, Tanya Z, Elser, Justin, Farmer, Andrew D, Ficklin, Stephen, Kumari, Sunita, Laporte, Marie-Angélique, Nelson, Rex T, Sadohara, Rie, Selby, Peter, Thessen, Anne E, Whitehead, Brandon, Sen, Taner Z

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AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture von Harper, Lisa, Campbell, Jacqueline, Cannon, Ethalinda K S, Jung, Sook, Poelchau, Monica, Walls, Ramona, Andorf, Carson, Arnaud, Elizabeth, Berardini, Tanya Z, Birkett, Clayton, Cannon, Steve, Carson, James, Condon, Bradford, Cooper, Laurel, Dunn, Nathan, Elsik, Christine G, Farmer, Andrew, Ficklin, Stephen P, Grant, David, Grau, Emily, Herndon, Nic, Hu, Zhi-Liang, Humann, Jodi, Jaiswal, Pankaj, Jonquet, Clement, Laporte, Marie-Angélique, Larmande, Pierre, Lazo, Gerard, McCarthy, Fiona, Menda, Naama, Mungall, Christopher J, Munoz-Torres, Monica C, Naithani, Sushma, Nelson, Rex, Nesdill, Daureen, Park, Carissa, Reecy, James, Reiser, Leonore, Sanderson, Lacey-Anne, Sen, Taner Z, Staton, Margaret, Subramaniam, Sabarinath, Tello-Ruiz, Marcela Karey, Unda, Victor, Unni, Deepak, Wang, Liya, Ware, Doreen, Wegrzyn, Jill, Williams, Jason, Woodhouse, Margaret, Yu, Jing, Main, Doreen

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PhyloGenes: An online phylogenetics and functional genomics resource for plant gene function inference von Zhang, Peifen, Berardini, Tanya Z., Ebert, Dustin, Li, Qian, Mi, Huaiyu, Muruganujan, Anushya, Prithvi, Trilok, Reiser, Leonore, Sawant, Swapnil, Thomas, Paul D., Huala, Eva

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Annotation of gene product function from high-throughput studies using the Gene Ontology von Attrill, Helen, Gaudet, Pascale, Huntley, Rachael P, Lovering, Ruth C, Engel, Stacia R, Poux, Sylvain, Van Auken, Kimberly M, Georghiou, George, Chibucos, Marcus C, Berardini, Tanya Z, Wood, Valerie, Drabkin, Harold, Fey, Petra, Garmiri, Penelope, Harris, Midori A, Sawford, Tony, Reiser, Leonore, Tauber, Rebecca, Toro, Sabrina

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Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts von Wei, Chih-Hsuan, Harris, Bethany R, Li, Donghui, Berardini, Tanya Z, Huala, Eva, Kao, Hung-Yu, Lu, Zhiyong

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Improving Interpretation of Cardiac Phenotypes and Enhancing Discovery With Expanded Knowledge in the Gene Ontology von Lovering, Ruth C, Roncaglia, Paola, Howe, Douglas G, Laulederkind, Stanley J F, Khodiyar, Varsha K, Berardini, Tanya Z, Tweedie, Susan, Foulger, Rebecca E, Osumi-Sutherland, David, Campbell, Nancy H, Huntley, Rachael P, Talmud, Philippa J, Blake, Judith A, Breckenridge, Ross, Riley, Paul R, Lambiase, Pier D, Elliott, Perry M, Clapp, Lucie, Tinker, Andrew, Hill, David P

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