A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis von Zhang, Runxuan, Kuo, Richard, Coulter, Max, Calixto, Cristiane P G, Entizne, Juan Carlos, Guo, Wenbin, Marquez, Yamile, Milne, Linda, Riegler, Stefan, Matsui, Akihiro, Tanaka, Maho, Harvey, Sarah, Gao, Yubang, Wießner-Kroh, Theresa, Paniagua, Alejandro, Crespi, Martin, Denby, Katherine, Hur, Asa Ben, Huq, Enamul, Jantsch, Michael, Jarmolowski, Artur, Koester, Tino, Laubinger, Sascha, Li, Qingshun Quinn, Gu, Lianfeng, Seki, Motoaki, Staiger, Dorothee, Sunkar, Ramanjulu, Szweykowska-Kulinska, Zofia, Tu, Shih-Long, Wachter, Andreas, Waugh, Robbie, Xiong, Liming, Zhang, Xiao-Ning, Conesa, Ana, Reddy, Anireddy S N, Barta, Andrea, Kalyna, Maria, Brown, John W S

Volltext

The spectrum of pre-mRNA splicing in autism von Engal, Eden, Zhang, Zhenwei, Geminder, Ophir, Jaffe-Herman, Shiri, Kay, Gillian, Ben-Hur, Asa, Salton, Maayan

Volltext

Combining heterogeneous data sources for accurate functional annotation of proteins von Sokolov, Artem, Funk, Christopher, Graim, Kiley, Verspoor, Karin, Ben-Hur, Asa

Volltext

Phenotyping and predicting wheat spike characteristics using image analysis and machine learning von Hammers, Mik, Winn, Zachary J., Ben‐Hur, Asa, Larkin, Dylan, Murry, Jamison, Mason, Richard Esten

Volltext

A survey of the sorghum transcriptome using single-molecule long reads von Abdel-Ghany, Salah E., Hamilton, Michael, Jacobi, Jennifer L., Ngam, Peter, Devitt, Nicholas, Schilkey, Faye, Ben-Hur, Asa, Reddy, Anireddy S. N.

Volltext

Identification of an intronic splicing regulatory element involved in auto‐regulation of alternative splicing of SCL33 pre‐mRNA von Thomas, Julie, Palusa, Saiprasad G, Prasad, Kasavajhala V.S.K, Ali, Gul Shad, Surabhi, Giridara‐Kumar, Ben‐Hur, Asa, Abdel‐Ghany, Salah E, Reddy, Anireddy S.N

Volltext

Predicting metamorphic relations for testing scientific software: a machine learning approach using graph kernels von Kanewala, Upulee, Bieman, James M., Ben-Hur, Asa

Volltext

Support vector machines and kernels for computational biology von Ben-Hur, Asa, Ong, Cheng Soon, Sonnenburg, Sören, Schölkopf, Bernhard, Rätsch, Gunnar

Volltext

PAIRpred: Partner-specific prediction of interacting residues from sequence and structure von Afsar Minhas, Fayyaz ul Amir, Geiss, Brian J., Ben-Hur, Asa

Volltext

Evidence for the role of transcription factors in the co-transcriptional regulation of intron retention von Ullah, Fahad, Jabeen, Saira, Salton, Maayan, Reddy, Anireddy S N, Ben-Hur, Asa

Volltext

Protein quality assessment with a loss function designed for high-quality decoys von Roy, Soumyadip, Ben-Hur, Asa

Volltext

RODAN: a fully convolutional architecture for basecalling nanopore RNA sequencing data von Neumann, Don, Reddy, Anireddy S N, Ben-Hur, Asa

Volltext

Abiotic Stresses Modulate Landscape of Poplar Transcriptome via Alternative Splicing, Differential Intron Retention, and Isoform Ratio Switching von Filichkin, Sergei A, Hamilton, Michael, Dharmawardhana, Palitha D, Singh, Sunil K, Sullivan, Christopher, Ben-Hur, Asa, Reddy, Anireddy S N, Jaiswal, Pankaj

Volltext

Exploring the relationship between intron retention and chromatin accessibility in plants von Ullah, Fahad, Hamilton, Michael, Reddy, Anireddy S N, Ben-Hur, Asa

Volltext

SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data von Rogers, Mark F, Thomas, Julie, Reddy, Anireddy SN, Ben-Hur, Asa

Volltext

Choosing negative examples for the prediction of protein-protein interactions von Ben-Hur, Asa, Noble, William Stafford

Volltext

De novo design of synthetic prion domains von Toombs, James A., Petri, Michelina, Paul, Kacy R., Kan, Grace Y., Ben-Hur, Asa, Ross, Eric D.

Volltext

Genotypic Predictors of Human Immunodeficiency Virus Type 1 Drug Resistance von Rhee, Soo-Yon, Taylor, Jonathan, Wadhera, Gauhar, Ben-Hur, Asa, Brutlag, Douglas L., Shafer, Robert W.

Volltext

Amino acid composition predicts prion activity von Afsar Minhas, Fayyaz Ul Amir, Ross, Eric D, Ben-Hur, Asa

Volltext

Remote homology detection: a motif based approach von Ben-Hur, Asa, Brutlag, Douglas

Volltext