Enhanced regulatory sequence prediction using gapped k-mer features von Ghandi, Mahmoud, Lee, Dongwon, Mohammad-Noori, Morteza, Beer, Michael A

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Predicting enhancer activity and variant impact using gkm‐SVM von Beer, Michael A.

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Local epigenomic state cannot discriminate interacting and non-interacting enhancer-promoter pairs with high accuracy von Xi, Wang, Beer, Michael A

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Loop competition and extrusion model predicts CTCF interaction specificity von Xi, Wang, Beer, Michael A.

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Gapped-kmer sequence modeling robustly identifies regulatory vocabularies and distal enhancers conserved between evolutionarily distant mammals von Oh, Jin Woo, Beer, Michael A.

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Discriminative prediction of mammalian enhancers from DNA sequence von Lee, Dongwon, Karchin, Rachel, Beer, Michael A

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The role of the Bhattacharyya distance in stochastic model updating von Bi, Sifeng, Broggi, Matteo, Beer, Michael

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A method to predict the impact of regulatory variants from DNA sequence von Lee, Dongwon, Gorkin, David U, Baker, Maggie, Strober, Benjamin J, Asoni, Alessandro L, McCallion, Andrew S, Beer, Michael A

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gkmSVM: an R package for gapped-kmer SVM von Ghandi, Mahmoud, Mohammad-Noori, Morteza, Ghareghani, Narges, Lee, Dongwon, Garraway, Levi, Beer, Michael A

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Comparison of the transcriptional landscapes between human and mouse tissues von Lin, Shin, Lin, Yiing, Nery, Joseph R., Urich, Mark A., Breschi, Alessandra, Davis, Carrie A., Dobin, Alexander, Zaleski, Christopher, Beer, Michael A., Chapman, William C., Gingeras, Thomas R., Ecker, Joseph R., Snyder, Michael P.

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Advanced Line Sampling for efficient robust reliability analysis von de Angelis, Marco, Patelli, Edoardo, Beer, Michael

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Indicators of Successful Career Transitions from Physical Sciences and Engineering to Biomedical Research von Beer, Michael A

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Dynamic network-guided CRISPRi screen identifies CTCF-loop-constrained nonlinear enhancer gene regulatory activity during cell state transitions von Luo, Renhe, Yan, Jielin, Oh, Jin Woo, Xi, Wang, Shigaki, Dustin, Wong, Wilfred, Cho, Hyein S., Murphy, Dylan, Cutler, Ronald, Rosen, Bess P., Pulecio, Julian, Yang, Dapeng, Glenn, Rachel A., Chen, Tingxu, Li, Qing V., Vierbuchen, Thomas, Sidoli, Simone, Apostolou, Effie, Huangfu, Danwei, Beer, Michael A.

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Sequence-based correction of barcode bias in massively parallel reporter assays von Lee, Dongwon, Kapoor, Ashish, Lee, Changhee, Mudgett, Michael, Beer, Michael A, Chakravarti, Aravinda

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Fit to Compete: Why Honest Conversations About Your Company's Capabilities Are the Key to a Winning Strategy von Beer, Michael

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Transactivation of miR-34a by p53 Broadly Influences Gene Expression and Promotes Apoptosis von Chang, Tsung-Cheng, Wentzel, Erik A., Kent, Oliver A., Ramachandran, Kalyani, Mullendore, Michael, Lee, Kwang Hyuck, Feldmann, Georg, Yamakuchi, Munekazu, Ferlito, Marcella, Lowenstein, Charles J., Arking, Dan E., Beer, Michael A., Maitra, Anirban, Mendell, Joshua T.

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Long-term performance assessment and design of offshore structures von Zhang, Yi, Beer, Michael, Quek, Ser Tong

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Enhancer Predictions and Genome-Wide Regulatory Circuits von Beer, Michael A, Shigaki, Dustin, Huangfu, Danwei

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Predicting Gene Expression from Sequence von Beer, Michael A., Tavazoie, Saeed

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Understanding Human Errors in Construction Industry: Where, When, How and Why We Make Mistakes von Moura, Raphael, Knoll, Franz, Beer, Michael

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