Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas von Moncada, Reuben, Barkley, Dalia, Wagner, Florian, Chiodin, Marta, Devlin, Joseph C., Baron, Maayan, Hajdu, Cristina H., Simeone, Diane M., Yanai, Itai

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Widespread Transcriptional Scanning in the Testis Modulates Gene Evolution Rates von Xia, Bo, Yan, Yun, Baron, Maayan, Wagner, Florian, Barkley, Dalia, Chiodin, Marta, Kim, Sang Y., Keefe, David L., Alukal, Joseph P., Boeke, Jef D., Yanai, Itai

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New skin for the old RNA-Seq ceremony: the age of single-cell multi-omics von Baron, Maayan, Yanai, Itai

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A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure von Baron, Maayan, Veres, Adrian, Wolock, Samuel L., Faust, Aubrey L., Gaujoux, Renaud, Vetere, Amedeo, Ryu, Jennifer Hyoje, Wagner, Bridget K., Shen-Orr, Shai S., Klein, Allon M., Melton, Douglas A., Yanai, Itai

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Molecular Insights into Bacteriophage Evolution toward Its Host von de Leeuw, Marina, Baron, Maayan, Ben David, Oshrit, Kushmaro, Ariel

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Author Correction: Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas von Moncada, Reuben, Barkley, Dalia, Wagner, Florian, Chiodin, Marta, Devlin, Joseph C., Baron, Maayan, Hajdu, Cristina H., Simeone, Diane M., Yanai, Itai

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Abstract 178: Desmosome mutations in melanoma promote cellular proliferation and disease progression von Baron, Maayan, Ideker, Trey

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1295 Integrating drug structure and target binding affinity for improved prediction of survival in cancer patients treated with immune checkpoint inhibitors von Kumar, Sunil, Kuperwaser, Felicia, Tracy, Dillon, Sherman, Jeff, Chursov, Andrey, Vucic, Emily, Baron, Maayan

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1296 Reconstructing gene expression from clinical and genetic panel data for predictions of tumor microenvironment features and response to immune checkpoint inhibitor therapy von Kuperwaser, Felicia, Kumar, Sunil, Tracy, Dillon, Sherman, Jeff, Chursov, Andrey, Baron, Maayan, Vucic, Emily

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A Generalist Protist Predator Enables Coexistence in Multitrophic Predator-Prey Systems Containing a Phage and the Bacterial Predator Bdellovibrio von Johnke, Julia, Baron, Maayan, de Leeuw, Marina, Kushmaro, Ariel, Jurkevitch, Edouard, Harms, Hauke, Chatzinotas, Antonis

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Cancer cell states recur across tumor types and form specific interactions with the tumor microenvironment von Barkley, Dalia, Moncada, Reuben, Pour, Maayan, Liberman, Deborah A., Dryg, Ian, Werba, Gregor, Wang, Wei, Baron, Maayan, Rao, Anjali, Xia, Bo, França, Gustavo S., Weil, Alejandro, Delair, Deborah F., Hajdu, Cristina, Lund, Amanda W., Osman, Iman, Yanai, Itai

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It's about time: studying gene regulatory programs across serial organs von Baron, Maayan, Yanai, Itai

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Cellular adaptation to cancer therapy along a resistance continuum von França, Gustavo S., Baron, Maayan, King, Benjamin R., Bossowski, Jozef P., Bjornberg, Alicia, Pour, Maayan, Rao, Anjali, Patel, Ayushi S., Misirlioglu, Selim, Barkley, Dalia, Tang, Kwan Ho, Dolgalev, Igor, Liberman, Deborah A., Avital, Gal, Kuperwaser, Felicia, Chiodin, Marta, Levine, Douglas A., Papagiannakopoulos, Thales, Marusyk, Andriy, Lionnet, Timothée, Yanai, Itai

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Use of a systems-biology informed machine learning model to predict drug response using clinically available NGS data von Baron, Maayan, Chursov, Andrey, Funkhouser, Brandon, Kaffey, Jacob, Kumar, Sunil, Komatsoulis, George Anthony, Kuperwaser, Felicia, Ramchandran, Maya, Sherman, Jeff, Vucic, Emily

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Cooperation between melanoma cell states promotes metastasis through heterotypic cluster formation von Campbell, Nathaniel R., Rao, Anjali, Hunter, Miranda V., Sznurkowska, Magdalena K., Briker, Luzia, Zhang, Maomao, Baron, Maayan, Heilmann, Silja, Deforet, Maxime, Kenny, Colin, Ferretti, Lorenza P., Huang, Ting-Hsiang, Perlee, Sarah, Garg, Manik, Nsengimana, Jérémie, Saini, Massimo, Montal, Emily, Tagore, Mohita, Newton-Bishop, Julia, Middleton, Mark R., Corrie, Pippa, Adams, David J., Rabbie, Roy, Aceto, Nicola, Levesque, Mitchell P., Cornell, Robert A., Yanai, Itai, Xavier, Joao B., White, Richard M.

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The Stress-Like Cancer Cell State Is a Consistent Component of Tumorigenesis von Baron, Maayan, Tagore, Mohita, Hunter, Miranda V., Kim, Isabella S., Moncada, Reuben, Yan, Yun, Campbell, Nathaniel R., White, Richard M., Yanai, Itai

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GABA Regulates Electrical Activity and Tumor Initiation in Melanoma von Tagore, Mohita, Hergenreder, Emiliano, Perlee, Sarah C, Cruz, Nelly M, Menocal, Laura, Suresh, Shruthy, Chan, Eric, Baron, Maayan, Melendez, Stephanie, Dave, Asim, Chatila, Walid K, Nsengimana, Jeremie, Koche, Richard P, Hollmann, Travis J, Ideker, Trey, Studer, Lorenz, Schietinger, Andrea, White, Richard M

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Phylogenetic debugging of a complete human biosynthetic pathway transplanted into yeast von Agmon, Neta, Temple, Jasmine, Tang, Zuojian, Schraink, Tobias, Baron, Maayan, Chen, Jun, Mita, Paolo, Martin, James A, Tu, Benjamin P, Yanai, Itai, Fenyö, David, Boeke, Jef D

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Abstract 1502: Cell state mapping reveals a role for a stress program in melanoma von Baron, Maayan, Tagore, Mohita, Hunter, Miranda, Kim, Isabella S., Moncada, Reuben, Yan, Yun, Campbell, Nathaniel R., White, Richard M., Yanai, Itai

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Abstract 1107: Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma von Campbell, Nathaniel R., Zhang, Maomao, Baron, Maayan, Heilmann, Silja, Deforet, Maxime, Ferretti, Lorenza, Huang, Ting-Hsiang, Levesque, Mitchell P., Yanai, Itai, Xavier, Joao B., White, Richard M.

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