High-throughput functional testing of ENCODE segmentation predictions von Kwasnieski, Jamie C, Fiore, Christopher, Chaudhari, Hemangi G, Cohen, Barak A

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Transcription factor fluctuations underlie cell-to-cell variability in a signaling pathway response von Ramu, Avinash, Cohen, Barak A

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A quantitative metric of pioneer activity reveals that HNF4A has stronger in vivo pioneer activity than FOXA1 von Hansen, Jeffrey L, Cohen, Barak A

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Complex effects of nucleotide variants in a mammalian cis-regulatory element von Kwasnieski, Jamie C, Mogno, Ilaria, Myers, Connie A, Corbo, Joseph C, Cohen, Barak A

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Massively parallel in vivo enhancer assay reveals that highly local features determine the cis-regulatory function of ChIP-seq peaks von White, Michael A, Myers, Connie A, Corbo, Joseph C, Cohen, Barak A

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Analysis of combinatorial cis -regulation in synthetic and genomic promoters von Cohen, Barak A, Gertz, Jason, Siggia, Eric D

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Interactions between pluripotency factors specify cis-regulation in embryonic stem cells von Fiore, Chris, Cohen, Barak A

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A massively parallel reporter assay dissects the influence of chromatin structure on cis-regulatory activity von Maricque, Brett B, Chaudhari, Hemangi G, Cohen, Barak A

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Effect of genomic and cellular environments on gene expression noise von Hong, Clarice K Y, Ramu, Avinash, Zhao, Siqi, Cohen, Barak A

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Genomic environments scale the activities of diverse core promoters von Hong, Clarice K Y, Cohen, Barak A

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Transcription factor interactions explain the context-dependent activity of CRX binding sites von Loell, Kaiser J, Friedman, Ryan Z, Myers, Connie A, Corbo, Joseph C, Cohen, Barak A, White, Michael A

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Massively parallel characterization of insulator activity across the genome von Hong, Clarice K. Y., Wu, Yawei, Erickson, Alyssa A., Li, Jie, Federico, Arnold J., Cohen, Barak A.

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PTRE-seq reveals mechanism and interactions of RNA binding proteins and miRNAs von Cottrell, Kyle A., Chaudhari, Hemangi G., Cohen, Barak A., Djuranovic, Sergej

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Causal variation in yeast sporulation tends to reside in a pathway bottleneck von Lorenz, Kim, Cohen, Barak A

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Massively parallel synthetic promoter assays reveal the in vivo effects of binding site variants von Mogno, Ilaria, Kwasnieski, Jamie C, Cohen, Barak A

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A Simple Grammar Defines Activating and Repressing cis-Regulatory Elements in Photoreceptors von White, Michael A., Kwasnieski, Jamie C., Myers, Connie A., Shen, Susan Q., Corbo, Joseph C., Cohen, Barak A.

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Synthetic and genomic regulatory elements reveal aspects of cis-regulatory grammar in mouse embryonic stem cells von King, Dana M., Hong, Clarice Kit Yee, Shepherdson, James L., Granas, David M., Maricque, Brett B., Cohen, Barak A.

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Local sequence features that influence AP-1 cis -regulatory activity von Chaudhari, Hemangi G, Cohen, Barak A

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A genome-integrated massively parallel reporter assay reveals DNA sequence determinants of cis-regulatory activity in neural cells von Maricque, Brett B, Dougherty, Joseph D, Cohen, Barak A

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Functional characterization of enhancer activity during a long terminal repeat's evolution von Du, Alan Y, Zhuo, Xiaoyu, Sundaram, Vasavi, Jensen, Nicholas O, Chaudhari, Hemangi G, Saccone, Nancy L, Cohen, Barak A, Wang, Ting

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