Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn’s Disease von Lewis, James D., Chen, Eric Z., Baldassano, Robert N., Otley, Anthony R., Griffiths, Anne M., Lee, Dale, Bittinger, Kyle, Bailey, Aubrey, Friedman, Elliot S., Hoffmann, Christian, Albenberg, Lindsey, Sinha, Rohini, Compher, Charlene, Gilroy, Erin, Nessel, Lisa, Grant, Amy, Chehoud, Christel, Li, Hongzhe, Wu, Gary D., Bushman, Frederic D.

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Correlation Between Intraluminal Oxygen Gradient and Radial Partitioning of Intestinal Microbiota von Albenberg, Lindsey, Esipova, Tatiana V, Judge, Colleen P, Bittinger, Kyle, Chen, Jun, Laughlin, Alice, Grunberg, Stephanie, Baldassano, Robert N, Lewis, James D, Li, Hongzhe, Thom, Stephen R, Bushman, Frederic D, Vinogradov, Sergei A, Wu, Gary D

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Large Sample Size, Wide Variant Spectrum, and Advanced Machine-Learning Technique Boost Risk Prediction for Inflammatory Bowel Disease von Wei, Zhi, Wang, Wei, Bradfield, Jonathan, Li, Jin, Cardinale, Christopher, Frackelton, Edward, Kim, Cecilia, Mentch, Frank, Van Steen, Kristel, Visscher, Peter M., Baldassano, Robert N., Hakonarson, Hakon

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The stepwise assembly of the neonatal virome is modulated by breastfeeding von Liang, Guanxiang, Zhao, Chunyu, Zhang, Huanjia, Mattei, Lisa, Sherrill-Mix, Scott, Bittinger, Kyle, Kessler, Lyanna R., Wu, Gary D., Baldassano, Robert N., DeRusso, Patricia, Ford, Eileen, Elovitz, Michal A., Kelly, Matthew S., Patel, Mohamed Z., Mazhani, Tiny, Gerber, Jeffrey S., Kelly, Andrea, Zemel, Babette S., Bushman, Frederic D.

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Diet in the Pathogenesis and Treatment of Inflammatory Bowel Diseases von Lee, Dale, Albenberg, Lindsey, Compher, Charlene, Baldassano, Robert, Piccoli, David, Lewis, James D, Wu, Gary D

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Clinical and lifestyle patterns in Asian children with inflammatory bowel disease in the U.S von Zong, Wenjing, Patel, Amit, Chang, Vivian, Mitchel, Elana B, Stoner, Natalie, Baldassano, Robert N, Albenberg, Lindsey

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Lifetime Economic Burden of Crohn’s Disease and Ulcerative Colitis by Age at Diagnosis von Lichtenstein, Gary R., MD, Shahabi, Ahva, MPH, PhD, Seabury, Seth A., PhD, Lakdawalla, Darius N., PhD, Espinosa, Oliver Díaz, PhD, Green, Sarah, BA, Brauer, Michelle, BS, Baldassano, Robert N., MD

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The role of monogenic disease in children with very early onset inflammatory bowel disease von Kelsen, Judith R, Baldassano, Robert N

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Inflammatory bowel disease: The difference between children and adults von Kelsen, Judith, Baldassano, Robert N.

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Innate lymphoid cells support regulatory T cells in the intestine through interleukin-2 von Zhou, Lei, Chu, Coco, Teng, Fei, Bessman, Nicholas J., Goc, Jeremy, Santosa, Endi K., Putzel, Gregory G., Kabata, Hiroki, Kelsen, Judith R., Baldassano, Robert N., Shah, Manish A., Sockolow, Robbyn E., Vivier, Eric, Eberl, Gérard, Smith, Kendall A., Sonnenberg, Gregory F.

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Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature von Haberman, Yael, Tickle, Timothy L, Dexheimer, Phillip J, Kim, Mi-Ok, Tang, Dora, Karns, Rebekah, Baldassano, Robert N, Noe, Joshua D, Rosh, Joel, Markowitz, James, Heyman, Melvin B, Griffiths, Anne M, Crandall, Wallace V, Mack, David R, Baker, Susan S, Huttenhower, Curtis, Keljo, David J, Hyams, Jeffrey S, Kugathasan, Subra, Walters, Thomas D, Aronow, Bruce, Xavier, Ramnik J, Gevers, Dirk, Denson, Lee A

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Group 3 innate lymphoid cells mediate intestinal selection of commensal bacteria-specific CD4⁺ T cells von Hepworth, Matthew R., Fung, Thomas C., Masur, Samuel H., Kelsen, Judith R., McConnell, Fiona M., Dubrot, Juan, Withers, David R., Hugues, Stephanie, Farrar, Michael A., Reith, Walter, Eberl, Gérard, Baldassano, Robert N., Laufer, Terri M., Elson, Charles O., Sonnenberg, Gregory F.

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Safety and Efficacy of Adalimumab for Moderate to Severe Crohn's Disease in Children von Hyams, Jeffrey S, Griffiths, Anne, Markowitz, James, Baldassano, Robert N, Faubion, William A, Colletti, Richard B, Dubinsky, Marla, Kierkus, Jaroslaw, Rosh, Joel, Wang, Yaqin, Huang, Bidan, Bittle, Barry, Marshall, Michael, Lazar, Andreas

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Transient inhibition of ROR-γt therapeutically limits intestinal inflammation by reducing TH17 cells and preserving group 3 innate lymphoid cells von Withers, David R, Hepworth, Matthew R, Wang, Xinxin, Mackley, Emma C, Halford, Emily E, Dutton, Emma E, Marriott, Clare L, Brucklacher-Waldert, Verena, Veldhoen, Marc, Kelsen, Judith, Baldassano, Robert N, Sonnenberg, Gregory F

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Human gut microbiome viewed across age and geography von Yatsunenko, Tanya, Rey, Federico E., Manary, Mark J., Trehan, Indi, Dominguez-Bello, Maria Gloria, Contreras, Monica, Magris, Magda, Hidalgo, Glida, Baldassano, Robert N., Anokhin, Andrey P., Heath, Andrew C., Warner, Barbara, Reeder, Jens, Kuczynski, Justin, Caporaso, J. Gregory, Lozupone, Catherine A., Lauber, Christian, Clemente, Jose Carlos, Knights, Dan, Knight, Rob, Gordon, Jeffrey I.

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Infliximab Is Not Associated With Increased Risk of Malignancy or Hemophagocytic Lymphohistiocytosis in Pediatric Patients With Inflammatory Bowel Disease von Hyams, Jeffrey S, Dubinsky, Marla C, Baldassano, Robert N, Colletti, Richard B, Cucchiara, Salvatore, Escher, Johanna, Faubion, William, Fell, John, Gold, Benjamin D, Griffiths, Anne, Koletzko, Sibylle, Kugathasan, Subra, Markowitz, James, Ruemmele, Frank M, Veereman, Gigi, Winter, Harland, Masel, Nicholas, Shin, Chu Ri, Tang, Kezhen L, Thayu, Meena

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Gut microbiota features associated with Clostridioides difficile colonization in puppies von Berry, Alexander S F, Kelly, Brendan J, Barnhart, Denise, Kelly, Donna J, Beiting, Daniel P, Baldassano, Robert N, Redding, Laurel E

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Transcriptional risk scores link GWAS to eQTLs and predict complications in Crohn's disease von Marigorta, Urko M, Denson, Lee A, Hyams, Jeffrey S, Mondal, Kajari, Prince, Jarod, Walters, Thomas D, Griffiths, Anne, Noe, Joshua D, Crandall, Wallace V, Rosh, Joel R, Mack, David R, Kellermayer, Richard, Heyman, Melvin B, Baker, Susan S, Stephens, Michael C, Baldassano, Robert N, Markowitz, James F, Kim, Mi-Ok, Dubinsky, Marla C, Cho, Judy, Aronow, Bruce J, Kugathasan, Subra, Gibson, Greg

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The Treatment-Naive Microbiome in New-Onset Crohn’s Disease von Gevers, Dirk, Kugathasan, Subra, Denson, Lee A., Vázquez-Baeza, Yoshiki, Van Treuren, Will, Ren, Boyu, Schwager, Emma, Knights, Dan, Song, Se Jin, Yassour, Moran, Morgan, Xochitl C., Kostic, Aleksandar D., Luo, Chengwei, González, Antonio, McDonald, Daniel, Haberman, Yael, Walters, Thomas, Baker, Susan, Rosh, Joel, Stephens, Michael, Heyman, Melvin, Markowitz, James, Baldassano, Robert, Griffiths, Anne, Sylvester, Francisco, Mack, David, Kim, Sandra, Crandall, Wallace, Hyams, Jeffrey, Huttenhower, Curtis, Knight, Rob, Xavier, Ramnik J.

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Prediction of complicated disease course for children newly diagnosed with Crohn's disease: a multicentre inception cohort study von Kugathasan, Subra, Dr, Denson, Lee A, MD, Walters, Thomas D, MD, Kim, Mi-Ok, PhD, Marigorta, Urko M, PhD, Schirmer, Melanie, PhD, Mondal, Kajari, PhD, Liu, Chunyan, MS, Griffiths, Anne, MD, Noe, Joshua D, MD, Crandall, Wallace V, MD, Snapper, Scott, MD, Rabizadeh, Shervin, MD, Rosh, Joel R, MD, Shapiro, Jason M, MD, Guthery, Stephen, MD, Mack, David R, MD, Kellermayer, Richard, MD, Kappelman, Michael D, MD, Steiner, Steven, MD, Moulton, Dedrick E, MD, Keljo, David, MD, Cohen, Stanley, MD, Oliva-Hemker, Maria, MD, Heyman, Melvin B, MD, Otley, Anthony R, MD, Baker, Susan S, MD, Evans, Jonathan S, MD, Kirschner, Barbara S, MD, Patel, Ashish S, MD, Ziring, David, MD, Trapnell, Bruce C, MD, Sylvester, Francisco A, MD, Stephens, Michael C, MD, Baldassano, Robert N, MD, Markowitz, James F, MD, Cho, Judy, MD, Xavier, Ramnik J, MD, Huttenhower, Curtis, PhD, Aronow, Bruce J, PhD, Gibson, Greg, PhD, Hyams, Jeffrey S, MD, Dubinsky, Marla C, MD

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