Cacao pod transcriptome profiling of seven genotypes identifies features associated with post-penetration resistance to Phytophthora palmivora von Baruah, Indrani K., Shao, Jonathan, Ali, Shahin S., Schmidt, Martha E., Meinhardt, Lyndel W., Bailey, Bryan A., Cohen, Stephen P.

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Comparative Genomic Analysis of 31 Phytophthora Genomes Reveals Genome Plasticity and Horizontal Gene Transfer von Kronmiller, Brent A, Feau, Nicolas, Shen, Danyu, Tabima, Javier F, Ali, Shahin S, Armitage, Andrew D, Arredondo, Felipe, Bailey, Bryan A, Bollmann, Stephanie R, Dale, Angela, Harrison, Richard J, Hrywkiw, Kelly, Kasuga, Takao, McDougal, Rebecca, Nellist, Charlotte F, Panda, Preeti, Tripathy, Sucheta, Williams, Nari M, Ye, Wenwu, Wang, Yuanchao, Hamelin, Richard C, Grünwald, Niklaus J

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Changes in Gene Expression in Leaves of Cacao Genotypes Resistant and Susceptible to Phytophthora palmivora Infection von Baruah, Indrani K, Ali, Shahin S, Shao, Jonathan, Lary, David, Bailey, Bryan A

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Endophytic Trichoderma Isolates from Tropical Environments Delay Disease Onset and Induce Resistance Against Phytophthora capsici in Hot Pepper Using Multiple Mechanisms von Bae, Hanhong, Roberts, Daniel P, Lim, Hyoun-Sub, Strem, Mary D, Park, Soo-Chul, Ryu, Choong-Min, Melnick, Rachel L, Bailey, Bryan A

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Mitochondrial Genomics of Six Cacao Pathogens From the Basidiomycete Family Marasmiaceae von Ali, Shahin S., Amoako-Attah, Ishmael, Shao, Jonathan, Kumi-Asare, Eric, Meinhardt, Lyndel W., Bailey, Bryan A.

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A Draft Genome Resource for a Cacao Thread Blight Disease–Causing Strain of Paramarasmius palmivorus von Baruah, Indrani K., Amoako-Attah, Ishmael, Bukari, Yahaya, Meinhardt, Lyndel W., Bailey, Bryan A., Cohen, Stephen P.

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Isolation of endophytic endospore-forming bacteria from Theobroma cacao as potential biological control agents of cacao diseases von Melnick, Rachel L., Suárez, Carmen, Bailey, Bryan A., Backman, Paul A.

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Independent Whole-Genome Duplications Define the Architecture of the Genomes of the Devastating West African Cacao Black Pod Pathogen Phytophthora megakarya and Its Close Relative... von Morales-Cruz, Abraham, Ali, Shahin S, Minio, Andrea, Figueroa-Balderas, Rosa, García, Jadran F, Kasuga, Takao, Puig, Alina S, Marelli, Jean-Philippe, Bailey, Bryan A, Cantu, Dario

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Draft genome sequence of fastidious pathogen Ceratobasidium theobromae , which causes vascular-streak dieback in Theobroma cacao von Ali, Shahin S, Asman, Asman, Shao, Jonathan, Firmansyah, Amanda P, Susilo, Agung W, Rosmana, Ade, McMahon, Peter, Junaid, Muhammad, Guest, David, Kheng, Tee Yei, Meinhardt, Lyndel W, Bailey, Bryan A

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Chocolate Under Threat from Old and New Cacao Diseases von Marelli, Jean-Philippe, Guest, David I, Bailey, Bryan A, Evans, Harry C, Brown, Judith K, Junaid, Muhammad, Barreto, Robert W, Lisboa, Daniela O, Puig, Alina S

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The beneficial endophyte Trichoderma hamatum isolate DIS 219b promotes growth and delays the onset of the drought response in Theobroma cacao von Bae, Hanhong, Sicher, Richard C., Kim, Moon S., Kim, Soo-Hyung, Strem, Mary D., Melnick, Rachel L., Bailey, Bryan A.

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Pathogenicity of Lasiodiplodia theobromae isolated from cocoa dieback disease in South Sulawesi, Indonesia von Asman, Asman, Rosmana, Ade, Bailey, Bryan A., Ali, Shahin S., Iwanami, Toru, Sjam, Sylvia, Amin, Nur, Kuswinanti, Tutik

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The mitochondrial genome of Moniliophthora roreri, the frosty pod rot pathogen of cacao von Costa, Gustavo G.L., Cabrera, Odalys G., Tiburcio, Ricardo A., Medrano, Francisco J., Carazzolle, Marcelo F., Thomazella, Daniela P.T., Schuster, Stephen C., Carlson, John E., Guiltinan, Mark J., Bailey, Bryan A., Mieczkowski, Piotr, Pereira, Gonçalo A.G., Meinhardt, Lyndel W.

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Moniliophthora roreri, causal agent of cacao frosty pod rot von Bailey, Bryan A., Evans, Harry C., Phillips‐Mora, Wilbert, Ali, Shahin S., Meinhardt, Lyndel W.

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Proteomic and genetic analysis of glycinin subunits of sixteen soybean genotypes von Natarajan, Savithiry, Xu, Chenping, Bae, Hanhong, Bailey, Bryan A., Cregan, Perry, Caperna, Thomas J., Garrett, Wesley M., Luthria, Devanand

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Identification and Characterization of Fungi Causing Thread Blight Diseases on Cacao in Ghana von Amoako-Attah, Ishmael, Shahin, Ali S., Aime, M. Catherine, Odamtten, George T., Cornelius, Eric, Nyaku, Salome T., Kumi-Asare, E., Yahaya, Henry B., Bailey, Bryan A.

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Draft genome for the horse hair fungus, Marasmius crinis-equi , isolated from cacao in Ghana von Cohen, Stephen P, Kakati, Indrani, Amoako-Attah, Ishmael, Bukari, Yahaya, Bailey, Bryan A, Meinhardt, Lyndel W

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A disease and production index (DPI) for selection of cacao (Theobroma cacao) clones highly productive and tolerant to pod rot diseases von Jaimez, Ramón E., Vera, Danilo I., Mora, Argenis, Loor, Rey G., Bailey, Bryan A.

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Genome and secretome analysis of the hemibiotrophic fungal pathogen, Moniliophthora roreri, which causes frosty pod rot disease of cacao: mechanisms of the biotrophic and necrotrop... von Meinhardt, Lyndel W, Costa, Gustavo Gilson Lacerda, Thomazella, Daniela P T, Teixeira, Paulo José P L, Carazzolle, Marcelo Falsarella, Schuster, Stephan C, Carlson, John E, Guiltinan, Mark J, Mieczkowski, Piotr, Farmer, Andrew, Ramaraj, Thiruvarangan, Crozier, Jayne, Davis, Robert E, Shao, Jonathan, Melnick, Rachel L, Pereira, Gonçalo A G, Bailey, Bryan A

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Altered gene expression in three plant species in response to treatment with Nep1,a fungal protein that causes necrosis von Keates, S.E, Kostman, T.A, Anderson, J.D, Bailey, B.A

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