Population Genomics of Early Events in the Ecological Differentiation of Bacteria von Shapiro, B. Jesse, Friedman, Jonathan, Cordero, Otto X., Preheim, Sarah P., Timberlake, Sonia C., Szabó, Gitta, Polz, Martin F., J. Alm, Eric

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What Is Speciation? von Shapiro, B Jesse, Leducq, Jean-Baptiste, Mallet, James

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Evolutionary consequences of intra-patient phage predation on microbial populations von Seed, Kimberley D, Yen, Minmin, Shapiro, B Jesse, Hilaire, Isabelle J, Charles, Richelle C, Teng, Jessica E, Ivers, Louise C, Boncy, Jacques, Harris, Jason B, Camilli, Andrew

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Coherence of Microcystis species revealed through population genomics von Pérez-Carrascal, Olga M., Terrat, Yves, Giani, Alessandra, Fortin, Nathalie, Greer, Charles W., Tromas, Nicolas, Shapiro, B. Jesse

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Benchmarking bacterial genome-wide association study methods using simulated genomes and phenotypes von Saber, Morteza M, Shapiro, B Jesse

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Does diversity beget diversity in microbiomes? von Madi, Naïma, Vos, Michiel, Murall, Carmen Lia, Legendre, Pierre, Shapiro, B Jesse

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Community diversity is associated with intra-species genetic diversity and gene loss in the human gut microbiome von Madi, Naïma, Chen, Daisy, Wolff, Richard, Shapiro, B Jesse, Garud, Nandita R

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Population genomics of Mycobacterium tuberculosis in the Inuit von Lee, Robyn S, Radomski, Nicolas, Proulx, Jean-Francois, Levade, Ines, Shapiro, B Jesse, McIntosh, Fiona, Soualhine, Hafid, Menzies, Dick, Behr, Marcel A

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Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria von Pérez-Carrascal, Olga M., Tromas, Nicolas, Terrat, Yves, Moreno, Elisa, Giani, Alessandra, Corrêa Braga Marques, Laisa, Fortin, Nathalie, Shapiro, B. Jesse

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Zooanthroponotic transmission of SARS-CoV-2 and host-specific viral mutations revealed by genome-wide phylogenetic analysis von Naderi, Sana, Chen, Peter E, Murall, Carmen Lia, Poujol, Raphael, Kraemer, Susanne, Pickering, Bradley S, Sagan, Selena M, Shapiro, B Jesse

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Environment and host species shape the skin microbiome of captive neotropical bats von Lemieux-Labonté, Virginie, Tromas, Nicolas, Shapiro, B Jesse, Lapointe, François-Joseph

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A Glyphosate-Based Herbicide Cross-Selects for Antibiotic Resistance Genes in Bacterioplankton Communities von Barbosa da Costa, Naíla, Hébert, Marie-Pier, Fugère, Vincent, Terrat, Yves, Fussmann, Gregor F, Gonzalez, Andrew, Shapiro, B Jesse

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Fine-Scale Adaptations to Environmental Variation and Growth Strategies Drive Phyllosphere Methylobacterium Diversity von Leducq, Jean-Baptiste, Seyer-Lamontagne, Émilie, Condrain-Morel, Domitille, Bourret, Geneviève, Sneddon, David, Foster, James A, Marx, Christopher J, Sullivan, Jack M, Shapiro, B Jesse, Kembel, Steven W

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Translational activity is uncoupled from nucleic acid content in bacterial cells of the human gut microbiota von Taguer, Mariia, Shapiro, B. Jesse, Maurice, Corinne F.

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The Inuit gut microbiome is dynamic over time and shaped by traditional foods von Dubois, Geneviève, Girard, Catherine, Lapointe, François-Joseph, Shapiro, B Jesse

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Sympatric speciation: when is it possible in bacteria? von Friedman, Jonathan, Alm, Eric J, Shapiro, B Jesse

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Gut Microbiome of the Canadian Arctic Inuit von Girard, Catherine, Tromas, Nicolas, Amyot, Marc, Shapiro, B Jesse

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Genome Evolution in Bacteria Isolated from Million-Year-Old Subseafloor Sediment von Orsi, William D, Magritsch, Tobias, Vargas, Sergio, Coskun, Ömer K, Vuillemin, Aurele, Höhna, Sebastian, Wörheide, Gert, D'Hondt, Steven, Shapiro, B Jesse, Carini, Paul

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Can Cyanobacterial Diversity in the Source Predict the Diversity in Sludge and the Risk of Toxin Release in a Drinking Water Treatment Plant? von Jalili, Farhad, Trigui, Hana, Guerra Maldonado, Juan Francisco, Dorner, Sarah, Zamyadi, Arash, Shapiro, B Jesse, Terrat, Yves, Fortin, Nathalie, Sauvé, Sébastien, Prévost, Michèle

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One Health: Urban birds peck up resistant pathogens von Derrick, Emma, Shapiro, B. Jesse

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