SNP2TFBS - a database of regulatory SNPs affecting predicted transcription factor binding site affinity von Kumar, Sunil, Ambrosini, Giovanna, Bucher, Philipp

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UCNEbase--a database of ultraconserved non-coding elements and genomic regulatory blocks von Dimitrieva, Slavica, Bucher, Philipp

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The Eukaryotic Promoter Database: expansion of EPDnew and new promoter analysis tools von Dreos, René, Ambrosini, Giovanna, Périer, Rouayda Cavin, Bucher, Philipp

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The eukaryotic promoter database in its 30th year: focus on non-vertebrate organisms von Dreos, René, Ambrosini, Giovanna, Groux, Romain, Cavin Périer, Rouaïda, Bucher, Philipp

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EPD in 2020: enhanced data visualization and extension to ncRNA promoters von Meylan, Patrick, Dreos, René, Ambrosini, Giovanna, Groux, Romain, Bucher, Philipp

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The secreted protease Adamts18 links hormone action to activation of the mammary stem cell niche von Ataca, Dalya, Aouad, Patrick, Constantin, Céline, Laszlo, Csaba, Beleut, Manfred, Shamseddin, Marie, Rajaram, Renuga Devi, Jeitziner, Rachel, Mead, Timothy J., Caikovski, Marian, Bucher, Philipp, Ambrosini, Giovanna, Apte, Suneel S., Brisken, Cathrin

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EPD and EPDnew, high-quality promoter resources in the next-generation sequencing era von Dreos, René, Ambrosini, Giovanna, Cavin Périer, Rouayda, Bucher, Philipp

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Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study von Ambrosini, Giovanna, Vorontsov, Ilya, Penzar, Dmitry, Groux, Romain, Fornes, Oriol, Nikolaeva, Daria D, Ballester, Benoit, Grau, Jan, Grosse, Ivo, Makeev, Vsevolod, Kulakovskiy, Ivan, Bucher, Philipp

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Influence of Rotational Nucleosome Positioning on Transcription Start Site Selection in Animal Promoters von Dreos, René, Ambrosini, Giovanna, Bucher, Philipp

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KRAB-zinc finger proteins and KAP1 can mediate long-range transcriptional repression through heterochromatin spreading von Groner, Anna C, Meylan, Sylvain, Ciuffi, Angela, Zangger, Nadine, Ambrosini, Giovanna, Dénervaud, Nicolas, Bucher, Philipp, Trono, Didier

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Computational identification and experimental characterization of preferred downstream positions in human core promoters von Dreos, René, Sloutskin, Anna, Malachi, Nati, Ideses, Diana, Bucher, Philipp, Juven-Gershon, Tamar

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Intraductal xenografts show lobular carcinoma cells rely on their own extracellular matrix and LOXL1 von Sflomos, George, Battista, Laura, Aouad, Patrick, De Martino, Fabio, Scabia, Valentina, Stravodimou, Athina, Ayyanan, Ayyakkannu, Ifticene‐Treboux, Assia, Bucher, Philipp, Fiche, Maryse, Ambrosini, Giovanna, Brisken, Cathrin

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Detection and benchmarking of somatic mutations in cancer genomes using RNA-seq data von Coudray, Alexandre, Battenhouse, Anna M, Bucher, Philipp, Iyer, Vishwanath R

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MER41 repeat sequences contain inducible STAT1 binding sites von Schmid, Christoph D, Bucher, Philipp

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Contraceptive progestins with androgenic properties stimulate breast epithelial cell proliferation von Shamseddin, Marie, De Martino, Fabio, Constantin, Céline, Scabia, Valentina, Lancelot, Anne‐Sophie, Laszlo, Csaba, Ayyannan, Ayyakkannu, Battista, Laura, Raffoul, Wassim, Gailloud‐Matthieu, Marie‐Christine, Bucher, Philipp, Fiche, Maryse, Ambrosini, Giovanna, Sflomos, George, Brisken, Cathrin

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RNA Profiling and Chromatin Immunoprecipitation-Sequencing Reveal that PTF1a Stabilizes Pancreas Progenitor Identity via the Control of MNX1/HLXB9 and a Network of Other Transcript... von Thompson, Nancy, Gésina, Emilie, Scheinert, Peter, Bucher, Philipp, Grapin-Botton, Anne

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Nuclear factor I revealed as family of promoter binding transcription activators von Pjanic, Milos, Pjanic, Petar, Schmid, Christoph, Ambrosini, Giovanna, Gaussin, Armelle, Plasari, Genta, Mazza, Christian, Bucher, Philipp, Mermod, Nicolas

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ZFN-site searches genomes for zinc finger nuclease target sites and off-target sites von Cradick, Thomas J, Ambrosini, Giovanna, Iseli, Christian, Bucher, Philipp, McCaffrey, Anton P

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PWMScan: a fast tool for scanning entire genomes with a position-specific weight matrix von Ambrosini, Giovanna, Groux, Romain, Bucher, Philipp

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Can survival prediction be improved by merging gene expression data sets? von Yasrebi, Haleh, Sperisen, Peter, Praz, Viviane, Bucher, Philipp

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