The enduring hypoxic response of Mycobacterium tuberculosis von Rustad, Tige R, Harrell, Maria I, Liao, Reiling, Sherman, David R

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Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory system von Galgano, Alessia, Forrer, Michael, Jaskiewicz, Lukasz, Kanitz, Alexander, Zavolan, Mihaela, Gerber, André P

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Independent and additive effects of glutamic acid and methionine on yeast longevity von Wu, Ziyun, Song, Lixia, Liu, Shao Quan, Huang, Dejian

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Yeast mitochondrial biogenesis: a role for the PUF RNA-binding protein Puf3p in mRNA localization von Saint-Georges, Yann, Garcia, Mathilde, Delaveau, Thierry, Jourdren, Laurent, Le Crom, Stephane, Lemoine, Sophie, Tanty, Veronique, Devaux, Frederic, Jacq, Claude

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High-throughput SuperSAGE for digital gene expression analysis of multiple samples using next generation sequencing von Matsumura, Hideo, Yoshida, Kentaro, Luo, Shujun, Kimura, Eiji, Fujibe, Takahiro, Albertyn, Zayed, Barrero, Roberto A, Krüger, Detlev H, Kahl, Günter, Schroth, Gary P, Terauchi, Ryohei

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RNA-Seq vs dual- and single-channel microarray data: sensitivity analysis for differential expression and clustering von Sîrbu, Alina, Kerr, Gráinne, Crane, Martin, Ruskin, Heather J

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Systematic identification of mRNAs recruited to argonaute 2 by specific microRNAs and corresponding changes in transcript abundance von Hendrickson, David G, Hogan, Daniel J, Herschlag, Daniel, Ferrell, James E, Brown, Patrick O

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Coupled evolution of transcription and mRNA degradation von Dori-Bachash, Mally, Shema, Efrat, Tirosh, Itay

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Heat shock response in yeast involves changes in both transcription rates and mRNA stabilities von Castells-Roca, Laia, García-Martínez, José, Moreno, Joaquín, Herrero, Enrique, Bellí, Gemma, Pérez-Ortín, José E

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Stress-dependent coordination of transcriptome and translatome in yeast von Halbeisen, Regula E, Gerber, André P

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Species accumulation curves and incidence-based species richness estimators to appraise the diversity of cultivable yeasts from beech forest soils von Yurkov, Andrey M, Kemler, Martin, Begerow, Dominik

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Coordinating genome expression with cell size von Marguerat, Samuel, Bähler, Jürg

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microRNA-mediated messenger RNA deadenylation contributes to translational repression in mammalian cells von Beilharz, Traude H, Humphreys, David T, Clancy, Jennifer L, Thermann, Rolf, Martin, David I K, Hentze, Matthias W, Preiss, Thomas

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Systematic clustering of transcription start site landscapes von Zhao, Xiaobei, Valen, Eivind, Parker, Brian J, Sandelin, Albin

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Evolutionary systems biology of amino acid biosynthetic cost in yeast von Barton, Michael D, Delneri, Daniela, Oliver, Stephen G, Rattray, Magnus, Bergman, Casey M

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FREQ-Seq: a rapid, cost-effective, sequencing-based method to determine allele frequencies directly from mixed populations von Chubiz, Lon M, Lee, Ming-Chun, Delaney, Nigel F, Marx, Christopher J

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Genome-wide gene expression profiling of fertilization competent mycelium in opposite mating types in the heterothallic fungus Podospora anserina von Bidard, Frédérique, Aït Benkhali, Jinane, Coppin, Evelyne, Imbeaud, Sandrine, Grognet, Pierre, Delacroix, Hervé, Debuchy, Robert

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MicroRNA miR-328 regulates zonation morphogenesis by targeting CD44 expression von Wang, Chia-Hui, Lee, Daniel Y, Deng, Zhaoqun, Jeyapalan, Zina, Lee, Shao-Chen, Kahai, Shireen, Lu, Wei-Yang, Zhang, Yaou, Yang, Burton B

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Nuclear RNA sequencing of the mouse erythroid cell transcriptome von Mitchell, Jennifer A, Clay, Ieuan, Umlauf, David, Chen, Chih-Yu, Moir, Catherine A, Eskiw, Christopher H, Schoenfelder, Stefan, Chakalova, Lyubomira, Nagano, Takashi, Fraser, Peter

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A screen for RNA-binding proteins in yeast indicates dual functions for many enzymes von Scherrer, Tanja, Mittal, Nitish, Janga, Sarath Chandra, Gerber, André P

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