PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes von Segata, Nicola, Börnigen, Daniela, Morgan, Xochitl C., Huttenhower, Curtis

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Long noncoding RNA NEAT1 modulates immune cell functions and is suppressed in early onset myocardial infarction patients von Gast, Martina, Rauch, Bernhard H, Haghikia, Arash, Nakagawa, Shinichi, Haas, Jan, Stroux, Andrea, Schmidt, David, Schumann, Paul, Weiss, Stefan, Jensen, Lars, Kratzer, Adelheid, Kraenkel, Nicolle, Müller, Christian, Börnigen, Daniela, Hirose, Tetsuro, Blankenberg, Stefan, Escher, Felicitas, Kühl, Anja A, Kuss, Andreas W, Meder, Benjamin, Landmesser, Ulf, Zeller, Tanja, Poller, Wolfgang

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An unbiased evaluation of gene prioritization tools von BÖRNIGEN, Daniela, TRANCHEVENT, Léon-Charles, BONACHELA-CAPDEVILA, Francisco, DEVRIENDT, Koenraad, DE MOOR, Bart, DE CAUSMAECKER, Patrick, MOREAU, Yves

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Smooth Muscle Specific Ablation of CXCL12 in Mice Downregulates CXCR7 Associated with Defective Coronary Arteries and Cardiac Hypertrophy von Ghadge, Santhosh Kumar, Messner, Moritz, Seiringer, Herbert, Maurer, Thomas, Staggl, Simon, Zeller, Tanja, Müller, Christian, Börnigen, Daniela, Weninger, Wolfgang J., Geyer, Stefan H., Sopper, Sieghart, Krogsdam, Anne, Pölzl, Gerhard, Bauer, Axel, Zaruba, Marc-Michael

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Glioma escape signature and clonal development under immune pressure von Maire, Cecile L, Mohme, Malte, Bockmayr, Michael, Fita, Krystian D, Riecken, Kristoffer, Börnigen, Daniela, Alawi, Malik, Failla, Antonio, Kolbe, Katharina, Zapf, Svenja, Holz, Mareike, Neumann, Katrin, Dührsen, Lasse, Lange, Tobias, Fehse, Boris, Westphal, Manfred, Lamszus, Katrin

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DNases improve effectiveness of antibiotic treatment in murine polymicrobial sepsis von Willemsen, Jan-Fritjof, Wenskus, Julia, Lenz, Moritz, Rhode, Holger, Trochimiuk, Madgalena, Appl, Birgit, Pagarol-Raluy, Laia, Börnigen, Daniela, Bang, Corinna, Reinshagen, Konrad, Herrmann, Martin, Elrod, Julia, Boettcher, Michael

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Exploration of the sputum methylome and omics deconvolution by quadratic programming in molecular profiling of asthma and COPD: the road to sputum omics 2.0 von Groth, Espen E, Weber, Melanie, Bahmer, Thomas, Pedersen, Frauke, Kirsten, Anne, Börnigen, Daniela, Rabe, Klaus F, Watz, Henrik, Ammerpohl, Ole, Goldmann, Torsten

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Finding the targets of a drug by integration of gene expression data with a protein interaction network von Laenen, Griet, Thorrez, Lieven, Börnigen, Daniela, Moreau, Yves

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Functional profiling of the gut microbiome in disease-associated inflammation von Börnigen, Daniela, Morgan, Xochitl C, Franzosa, Eric A, Ren, Boyu, Xavier, Ramnik J, Garrett, Wendy S, Huttenhower, Curtis

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An arrhythmogenic metabolite in atrial fibrillation von Krause, Julia, Nickel, Alexander, Madsen, Alexandra, Aitken-Buck, Hamish M, Stoter, A. M. Stella, Schrapers, Jessica, Ojeda, Francisco, Geiger, Kira, Kern, Melanie, Kohlhaas, Michael, Bertero, Edoardo, Hofmockel, Patrick, Hübner, Florian, Assum, Ines, Heinig, Matthias, Müller, Christian, Hansen, Arne, Krause, Tobias, Park, Deung-Dae, Just, Steffen, Aïssi, Dylan, Börnigen, Daniela, Lindner, Diana, Friedrich, Nele, Alhussini, Khaled, Bening, Constanze, Schnabel, Renate B, Karakas, Mahir, Iacoviello, Licia, Salomaa, Veikko, Linneberg, Allan, Tunstall-Pedoe, Hugh, Kuulasmaa, Kari, Kirchhof, Paulus, Blankenberg, Stefan, Christ, Torsten, Eschenhagen, Thomas, Lamberts, Regis R, Maack, Christoph, Stenzig, Justus, Zeller, Tanja

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Computational Reconstruction of NFκB Pathway Interaction Mechanisms during Prostate Cancer von Börnigen, Daniela, Tyekucheva, Svitlana, Wang, Xiaodong, Rider, Jennifer R, Lee, Gwo-Shu, Mucci, Lorelei A, Sweeney, Christopher, Huttenhower, Curtis

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Concordance of gene expression in human protein complexes reveals tissue specificity and pathology von Börnigen, Daniela, Pers, Tune H, Thorrez, Lieven, Huttenhower, Curtis, Moreau, Yves, Brunak, Søren

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Midgut Volvulus Adds a Murine, Neutrophil-Driven Model of Septic Condition to the Experimental Toolbox von Elrod, Julia, Kiwit, Antonia, Lenz, Moritz, Rohde, Holger, Börnigen, Daniela, Alawi, Malik, Mohr, Christoph, Pagerols Raluy, Laia, Trochimiuk, Magdalena, Knopf, Jasmin, Reinshagen, Konrad, Herrmann, Martin, Boettcher, Michael

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Low Tristetraprolin Expression Is Associated with Lethal Prostate Cancer von Gerke, Travis, Beltran, Himisha, Wang, Xiaodong, Lee, Gwo-Shu Mary, Sboner, Andrea, Karnes, R Jeffrey, Klein, Eric A, Davicioni, Elai, Yousefi, Kasra, Ross, Ashley E, Börnigen, Daniela, Huttenhower, Curtis, Mucci, Lorelei A, Trock, Bruce J, Sweeney, Christopher J

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Computational Reconstruction of NFKB Pathway Interaction Mechanisms during Prostate Cancer von Börnigen, Daniela, Tyekucheva, Svitlana, Wang, Xiaodong, Rider, Jennifer R, Lee, Gwo-Shu, Mucci, Lorelei A, Sweeney, Christopher, Huttenhower, Curtis

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Systems Medicine as an Emerging Tool for Cardiovascular Genetics von Haase, Tina, Börnigen, Daniela, Müller, Christian, Zeller, Tanja

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Lynx web services for annotations and systems analysis of multi-gene disorders von Sulakhe, Dinanath, Taylor, Andrew, Balasubramanian, Sandhya, Feng, Bo, Xie, Bingqing, Börnigen, Daniela, Dave, Utpal J, Foster, Ian T, Gilliam, T Conrad, Maltsev, Natalia

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An integrative computational approach for prioritization of genomic variants von Dubchak, Inna, Balasubramanian, Sandhya, Wang, Sheng, Cem, Meydan, Meyden, Cem, Sulakhe, Dinanath, Poliakov, Alexander, Börnigen, Daniela, Xie, Bingqing, Taylor, Andrew, Ma, Jianzhu, Paciorkowski, Alex R, Mirzaa, Ghayda M, Dave, Paul, Agam, Gady, Xu, Jinbo, Al-Gazali, Lihadh, Mason, Christopher E, Ross, M Elizabeth, Maltsev, Natalia, Gilliam, T Conrad

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A reproducible approach to high-throughput biological data acquisition and integration von Börnigen, Daniela, Moon, Yo Sup, Rahnavard, Gholamali, Waldron, Levi, McIver, Lauren, Shafquat, Afrah, Franzosa, Eric A, Miropolsky, Larissa, Sweeney, Christopher, Morgan, Xochitl C, Garrett, Wendy S, Huttenhower, Curtis

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Classification of Brain Tumors by Nanopore Sequencing of Cell-Free DNA from Cerebrospinal Fluid von Afflerbach, Ann-Kristin, Rohrandt, Christian, Brändl, Björn, Sönksen, Marthe, Hench, Jürgen, Frank, Stephan, Börnigen, Daniela, Alawi, Malik, Mynarek, Martin, Winkler, Beate, Ricklefs, Franz, Synowitz, Michael, Dührsen, Lasse, Rutkowski, Stefan, Wefers, Annika K, Müller, Franz-Josef, Schoof, Melanie, Schüller, Ulrich

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