Using the emerging Collaborative Cross to probe the immune system von Phillippi, J, Xie, Y, Miller, D R, Bell, T A, Zhang, Z, Lenarcic, A B, Aylor, D L, Krovi, S H, Threadgill, D W, Pardo-Manuel de Villena, F, Wang, W, Valdar, W, Frelinger, J A

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Impacts of Gestational FireMaster 550 Exposure on the Neonatal Cortex Are Sex Specific and Largely Attributable to the Organophosphate Esters von Witchey, Shannah K., Doyle, Michael G., Fredenburg, Jacob D., St. Armour, Genevieve, Horman, Brian, Odenkirk, Melanie T., Aylor, David L., Baker, Erin S., Patisaul, Heather B.

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Analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance (vol 47, pg 353, 2015) von Crowley, JJ, Zhabotynsky, V, Sun, W, Huang, S, Pakatci, IK, Kim, Y, Wang, JR, Morgan, AP, Calaway, JD, Aylor, DL

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Corrigendum: analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance von Crowley, James J, Zhabotynsky, Vasyl, Sun, Wei, Huang, Shunping, Pakatci, Isa Kemal, Kim, Yunjung, Wang, Jeremy R, Morgan, Andrew P, Calaway, John D, Aylor, David L, Yun, Zaining, Bell, Timothy A, Buus, Ryan J, Calaway, Mark E, Didion, John P, Gooch, Terry J, Hansen, Stephanie D, Robinson, Nashiya N, Shaw, Ginger D, Spence, Jason S, Quackenbush, Corey R, Barrick, Cordelia J, Nonneman, Randal J, Kim, Kyungsu, Xenakis, James, Xie, Yuying, Valdar, William, Lenarcic, Alan B, Wang, Wei, Welsh, Catherine E, Fu, Chen-Ping, Zhang, Zhaojun, Holt, James, Guo, Zhishan, Threadgill, David W, Tarantino, Lisa M, Miller, Darla R, Zou, Fei, McMillan, Leonard, Sullivan, Patrick F, de Villena, Fernando Pardo-Manuel

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Genome Wide Identification of SARS-CoV Susceptibility Loci Using the Collaborative Cross von Gralinski, Lisa E, Ferris, Martin T, Aylor, David L, Whitmore, Alan C, Green, Richard, Frieman, Matthew B, Deming, Damon, Menachery, Vineet D, Miller, Darla R, Buus, Ryan J, Bell, Timothy A, Churchill, Gary A, Threadgill, David W, Katze, Michael G, McMillan, Leonard, Valdar, William, Heise, Mark T, Pardo-Manuel de Villena, Fernando, Baric, Ralph S

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Modeling host genetic regulation of influenza pathogenesis in the collaborative cross von Ferris, Martin T, Aylor, David L, Bottomly, Daniel, Whitmore, Alan C, Aicher, Lauri D, Bell, Timothy A, Bradel-Tretheway, Birgit, Bryan, Janine T, Buus, Ryan J, Gralinski, Lisa E, Haagmans, Bart L, McMillan, Leonard, Miller, Darla R, Rosenzweig, Elizabeth, Valdar, William, Wang, Jeremy, Churchill, Gary A, Threadgill, David W, McWeeney, Shannon K, Katze, Michael G, Pardo-Manuel de Villena, Fernando, Baric, Ralph S, Heise, Mark T

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A Comparison of Cosmological Parameters Determined from CMB Temperature Power Spectra from the South Pole Telescope and the Planck Satellite von Aylor, K., Hou, Z., Knox, L., Story, K. T., Benson, B. A., Bleem, L. E., Carlstrom, J. E., Chang, C. L., Cho, H-M., Chown, R., Crawford, T. M., Crites, A. T., Haan, T. de, Dobbs, M. A., Everett, W. B., George, E. M., Halverson, N. W., Harrington, N. L., Holder, G. P., Holzapfel, W. L., Hrubes, J. D., Keisler, R., Lee, A. T., Leitch, E. M., Luong-Van, D., Marrone, D. P., McMahon, J. J., Meyer, S. S., Millea, M., Mocanu, L. M., Mohr, J. J., Natoli, T., Omori, Y., Padin, S., Pryke, C., Reichardt, C. L., Ruhl, J. E., Sayre, J. T., Schaffer, K. K., Shirokoff, E., Staniszewski, Z., Stark, A. A., Vanderlinde, K., Vieira, J. D., Williamson, R.

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Genetic analysis of complex traits in the emerging Collaborative Cross von Aylor, David L, Valdar, William, Foulds-Mathes, Wendy, Buus, Ryan J, Verdugo, Ricardo A, Baric, Ralph S, Ferris, Martin T, Frelinger, Jeff A, Heise, Mark, Frieman, Matt B, Gralinski, Lisa E, Bell, Timothy A, Didion, John D, Hua, Kunjie, Nehrenberg, Derrick L, Powell, Christine L, Steigerwalt, Jill, Xie, Yuying, Kelada, Samir N P, Collins, Francis S, Yang, Ivana V, Schwartz, David A, Branstetter, Lisa A, Chesler, Elissa J, Miller, Darla R, Spence, Jason, Liu, Eric Yi, McMillan, Leonard, Sarkar, Abhishek, Wang, Jeremy, Wang, Wei, Zhang, Qi, Broman, Karl W, Korstanje, Ron, Durrant, Caroline, Mott, Richard, Iraqi, Fuad A, Pomp, Daniel, Threadgill, David, de Villena, Fernando Pardo-Manuel, Churchill, Gary A

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ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia von Landt, Stephen G, Marinov, Georgi K, Kundaje, Anshul, Kheradpour, Pouya, Pauli, Florencia, Batzoglou, Serafim, Bernstein, Bradley E, Bickel, Peter, Brown, James B, Cayting, Philip, Chen, Yiwen, DeSalvo, Gilberto, Epstein, Charles, Fisher-Aylor, Katherine I, Euskirchen, Ghia, Gerstein, Mark, Gertz, Jason, Hartemink, Alexander J, Hoffman, Michael M, Iyer, Vishwanath R, Jung, Youngsook L, Karmakar, Subhradip, Kellis, Manolis, Kharchenko, Peter V, Li, Qunhua, Liu, Tao, Liu, X Shirley, Ma, Lijia, Milosavljevic, Aleksandar, Myers, Richard M, Park, Peter J, Pazin, Michael J, Perry, Marc D, Raha, Debasish, Reddy, Timothy E, Rozowsky, Joel, Shoresh, Noam, Sidow, Arend, Slattery, Matthew, Stamatoyannopoulos, John A, Tolstorukov, Michael Y, White, Kevin P, Xi, Simon, Farnham, Peggy J, Lieb, Jason D, Wold, Barbara J, Snyder, Michael

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Improving Cosmological Constraints from Galaxy Cluster Number Counts with CMB-cluster-lensing Data: Results from the SPT-SZ Survey and Forecasts for the Future von Chaubal, P. S., Reichardt, C. L., Gupta, N., Ansarinejad, B., Aylor, K., Balkenhol, L., Baxter, E. J., Bianchini, F., Benson, B. A., Bleem, L. E., Bocquet, S., Carlstrom, J. E., Chang, C. L., Crawford, T. M., Crites, A. T., de Haan, T., Dobbs, M. A., Everett, W. B., Floyd, B., George, E. M., Halverson, N. W., Holzapfel, W. L., Hrubes, J. D., Knox, L., Lee, A. T., Luong-Van, D., McMahon, J. J., Meyer, S. S., Mocanu, L. M., Mohr, J. J., Natoli, T., Padin, S., Pryke, C., Ruhl, J. E., Ruppin, F., Salvati, L., Saro, A., Schaffer, K. K., Shirokoff, E., Staniszewski, Z., Stark, A. A., Vieira, J. D., Williamson, R.

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Analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance von Crowley, James J, Zhabotynsky, Vasyl, Sun, Wei, Huang, Shunping, Pakatci, Isa Kemal, Kim, Yunjung, Wang, Jeremy R, Morgan, Andrew P, Calaway, John D, Aylor, David L, Yun, Zaining, Bell, Timothy A, Buus, Ryan J, Calaway, Mark E, Didion, John P, Gooch, Terry J, Hansen, Stephanie D, Robinson, Nashiya N, Shaw, Ginger D, Spence, Jason S, Quackenbush, Corey R, Barrick, Cordelia J, Nonneman, Randal J, Kim, Kyungsu, Xenakis, James, Xie, Yuying, Valdar, William, Lenarcic, Alan B, Wang, Wei, Welsh, Catherine E, Fu, Chen-Ping, Zhang, Zhaojun, Holt, James, Guo, Zhishan, Threadgill, David W, Tarantino, Lisa M, Miller, Darla R, Zou, Fei, McMillan, Leonard, Sullivan, Patrick F, Pardo-Manuel de Villena, Fernando

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A multi-megabase copy number gain causes maternal transmission ratio distortion on mouse chromosome 2 von Didion, John P, Morgan, Andrew P, Clayshulte, Amelia M-F, Mcmullan, Rachel C, Yadgary, Liran, Petkov, Petko M, Bell, Timothy A, Gatti, Daniel M, Crowley, James J, Hua, Kunjie, Aylor, David L, Bai, Ling, Calaway, Mark, Chesler, Elissa J, French, John E, Geiger, Thomas R, Gooch, Terry J, Garland, Jr, Theodore, Harrill, Alison H, Hunter, Kent, McMillan, Leonard, Holt, Matt, Miller, Darla R, O'Brien, Deborah A, Paigen, Kenneth, Pan, Wenqi, Rowe, Lucy B, Shaw, Ginger D, Simecek, Petr, Sullivan, Patrick F, Svenson, Karen L, Weinstock, George M, Threadgill, David W, Pomp, Daniel, Churchill, Gary A, Pardo-Manuel de Villena, Fernando

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Changes in Medical Errors after Implementation of a Handoff Program von Starmer, Amy J, Spector, Nancy D, Srivastava, Rajendu, West, Daniel C, Rosenbluth, Glenn, Allen, April D, Noble, Elizabeth L, Tse, Lisa L, Dalal, Anuj K, Keohane, Carol A, Lipsitz, Stuart R, Rothschild, Jeffrey M, Wien, Matthew F, Yoon, Catherine S, Zigmont, Katherine R, Wilson, Karen M, O’Toole, Jennifer K, Solan, Lauren G, Aylor, Megan, Bismilla, Zia, Coffey, Maitreya, Mahant, Sanjay, Blankenburg, Rebecca L, Destino, Lauren A, Everhart, Jennifer L, Patel, Shilpa J, Bale, James F, Spackman, Jaime B, Stevenson, Adam T, Calaman, Sharon, Cole, F. Sessions, Balmer, Dorene F, Hepps, Jennifer H, Lopreiato, Joseph O, Yu, Clifton E, Sectish, Theodore C, Landrigan, Christopher P

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The Design and Integrated Performance of SPT-3G von Bender, A. N., Benson, B. A., Dutcher, D., Foster, A., Montgomery, J., Rahlin, A., Ade, P. A. R., Ahmed, Z., Anderes, E., Archipley, M., Austermann, J. E., Barry, P. S., Thakur, R. Basu, Benabed, K., Bianchini, F., Bleem, L. E., Bouchet, F. R., Bryant, L., Byrum, K., Carlstrom, J. E., Carter, F. W., Cecil, T. W., Chang, C. L., Chaubal, P., Chen, G., Cho, H.-M., Chou, T.-L., Crawford, T. M., Cukierman, A., Denison, E. V., Dibert, K., Ding, J., Dobbs, M. A., Everett, W., Ferguson, K. R., Fu, J., Galli, S., Gambrel, A. E., Gardner, R. W., Gualtieri, R., Gupta, N., Halverson, N. W., Harke-Hosemann, A. H., Harrington, N. L., Henning, J. W., Hilton, G. C., Hivon, E., Holder, G. P., Holzapfel, W. L., Hood, J. C., Howe, D., Huang, N., Irwin, K. D., Jeong, O. B., Jonas, M., Jones, A., Khaire, T. S., Knox, L., Kofman, A. M., Korman, M., Kubik, D. L., Kuhlmann, S., Kuo, C.-L., Lee, A. T., Leitch, E. M., Lowitz, A. E., Lu, C., Meyer, S. S., Michalik, D., Millea, M., Nguyen, H., Noble, G. I., Novosad, V., Omori, Y., Padin, S., Paschos, P., Pearson, J., Posada, C. M., Prabhu, K., Quan, W., Reichardt, C. L., Riebel, D., Riedel, B., Rouble, M., Ruhl, J. E., Schiappucci, E., Shirokoff, E., Smecher, G., Story, K. T., Suzuki, A., Thorne, B., Tucker, C., Umilta, C., Vale, L. R., Vanderlinde, K., Wang, G., Whitehorn, N., Wu, W. L. K., Yefremenko, V., Young, M. R.

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Constraints on Cosmological Parameters from the Angular Power Spectrum of a Combined 2500 deg2 SPT-SZ and Planck Gravitational Lensing Map von Simard, G., Omori, Y., Aylor, K., Baxter, E. J., Benson, B. A., Bleem, L. E., Carlstrom, J. E., Chang, C. L., Cho, H-M., Chown, R., Crawford, T. M., Crites, A. T., Haan, T. de, Dobbs, M. A., Everett, W. B., George, E. M., Halverson, N. W., Harrington, N. L., Henning, J. W., Holder, G. P., Hou, Z., Holzapfel, W. L., Hrubes, J. D., Knox, L., Lee, A. T., Leitch, E. M., Luong-Van, D., Manzotti, A., McMahon, J. J., Meyer, S. S., Mocanu, L. M., Mohr, J. J., Natoli, T., Padin, S., Pryke, C., Reichardt, C. L., Ruhl, J. E., Sayre, J. T., Schaffer, K. K., Shirokoff, E., Staniszewski, Z., Stark, A. A., Story, K. T., Vanderlinde, K., Vieira, J. D., Williamson, R., Wu, W. L. K.

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Male Infertility Is Responsible for Nearly Half of the Extinction Observed in the Mouse Collaborative Cross von Shorter, John R, Odet, Fanny, Aylor, David L, Pan, Wenqi, Kao, Chia-Yu, Fu, Chen-Ping, Morgan, Andrew P, Greenstein, Seth, Bell, Timothy A, Stevans, Alicia M, Feathers, Ryan W, Patel, Sunny, Cates, Sarah E, Shaw, Ginger D, Miller, Darla R, Chesler, Elissa J, McMillian, Leonard, O'Brien, Deborah A, Villena, Fernando Pardo-Manuel de

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The genome architecture of the Collaborative Cross mouse genetic reference population von Cross Consortium, Collaborative

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Consistency of cosmic microwave background temperature measurements in three frequency bands in the 2500-square-degree SPT-SZ survey von Mocanu, L.M., Crawford, T.M., Aylor, K., Benson, B.A., Bleem, L.E., Carlstrom, J.E., Chang, C.L., Cho, H.-M., Chown, R., Crites, A.T., de Haan, T., Dobbs, M.A., Everett, W.B., George, E.M., Halverson, N.W., Harrington, N.L., Henning, J.W., Holder, G.P., Holzapfel, W.L., Hou, Z., Hrubes, J.D., Knox, L., Lee, A.T., Luong-Van, D., Marrone, D.P., McMahon, J.J., Meyer, S.S., Millea, M., Mohr, J.J., Natoli, T., Omori, Y., Padin, S., Pryke, C., Reichardt, C.L., Ruhl, J.E., Sayre, J.T., Schaffer, K.K., Shirokoff, E., Staniszewski, Z., Stark, A.A., Story, K.T., Vanderlinde, K., Vieira, J.D., Williamson, R., Wu, W.L.K.

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Maps of the Southern Millimeter-wave Sky from Combined 2500 deg2 SPT-SZ and Planck Temperature Data von Chown, R., Omori, Y., Aylor, K., Benson, B. A., Bleem, L. E., Carlstrom, J. E., Chang, C. L., Cho, H-M., Crawford, T. M., Crites, A. T., de Haan, T., Dobbs, M. A., Everett, W. B., George, E. M., Henning, J. W., Halverson, N. W., Harrington, N. L., Holder, G., Holzapfel, W. L., Hou, Z., Hrubes, J. D., Knox, L., Lee, A. T., Luong-Van, D., Marrone, D. P., McMahon, J. J., Meyer, S. S., Millea, M., Mocanu, L. M., Mohr, J. J., Natoli, T., Padin, S., Pryke, C., Reichardt, C. L., Ruhl, J. E., Sayre, J. T., Schaffer, K. K., Shirokoff, E., Simard, G., Staniszewski, Z., Stark, A. A., Story, K. T., Vanderlinde, K., Vieira, J. D., Williamson, R., Wu, W. L. K.

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A Comparison of Maps and Power Spectra Determined from South Pole Telescope and Planck Data von Hou, Z., Aylor, K., Benson, B. A., Bleem, L. E., Carlstrom, J. E., Chang, C. L., Cho, H-M., Chown, R., Crawford, T. M., Crites, A. T., de Haan, T., Dobbs, M. A., Everett, W. B., Follin, B., George, E. M., Halverson, N. W., Harrington, N. L., Holder, G. P., Holzapfel, W. L., Hrubes, J. D., Keisler, R., Knox, L., Lee, A. T., Leitch, E. M., Luong-Van, D., Marrone, D. P., McMahon, J. J., Meyer, S. S., Millea, M., Mocanu, L. M., Mohr, J. J., Natoli, T., Omori, Y., Padin, S., Pryke, C., Reichardt, C. L., Ruhl, J. E., Sayre, J. T., Schaffer, K. K., Shirokoff, E., Staniszewski, Z., Stark, A. A., Story, K. T., Vanderlinde, K., Vieira, J. D., Williamson, R.

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