miRNA-mRNA integrated analysis reveals roles for miRNAs in primary breast tumors von Enerly, Espen, Steinfeld, Israel, Kleivi, Kristine, Leivonen, Suvi-Katri, Aure, Miriam R, Russnes, Hege G, Rønneberg, Jo Anders, Johnsen, Hilde, Navon, Roy, Rødland, Einar, Mäkelä, Rami, Naume, Bjørn, Perälä, Merja, Kallioniemi, Olli, Kristensen, Vessela N, Yakhini, Zohar, Børresen-Dale, Anne-Lise

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A regulatory network comprising let-7 miRNA and SMUG1 is associated with good prognosis in ER+ breast tumours von Lirussi, Lisa, Ayyildiz, Dilara, Liu, Yan, Montaldo, Nicola P, Carracedo, Sergio, Aure, Miriam R, Jobert, Laure, Tekpli, Xavier, Touma, Joel, Sauer, Torill, Dalla, Emiliano, Kristensen, Vessela N, Geisler, Jürgen, Piazza, Silvano, Tell, Gianluca, Nilsen, Hilde

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Targeted exploration and analysis of large cross-platform human transcriptomic compendia von Zhu, Qian, Wong, Aaron K, Krishnan, Arjun, Aure, Miriam R, Tadych, Alicja, Zhang, Ran, Corney, David C, Greene, Casey S, Bongo, Lars A, Kristensen, Vessela N, Charikar, Moses, Li, Kai, Troyanskaya, Olga G

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Copy Number Gain of hsa-miR-569 at 3q26.2 Leads to Loss of TP53INP1 and Aggressiveness of Epithelial Cancers von Chaluvally-Raghavan, Pradeep, Zhang, Fan, Pradeep, Sunila, Hamilton, Mark P., Zhao, Xi, Rupaimoole, Rajesha, Moss, Tyler, Lu, Yiling, Yu, Shuangxing, Pecot, Chad V., Aure, Miriam R., Peuget, Sylvain, Rodriguez-Aguayo, Cristian, Han, Hee-Dong, Zhang, Dong, Venkatanarayan, Avinashnarayan, Krohn, Marit, Kristensen, Vessela N., Gagea, Mihai, Ram, Prahlad, Liu, Wenbin, Lopez-Berestein, Gabriel, Lorenzi, Philip L., Børresen-Dale, Anne-Lise, Chin, Koei, Gray, Joe, Dusetti, Nelson J., McGuire, Sean E., Flores, Elsa R., Sood, Anil K., Mills, Gordon B.

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Landscape of somatic mutations in 560 breast cancer whole-genome sequences von Nik-Zainal, Serena, Davies, Helen, Staaf, Johan, Ramakrishna, Manasa, Glodzik, Dominik, Zou, Xueqing, Martincorena, Inigo, Alexandrov, Ludmil B., Martin, Sancha, Wedge, David C., Van Loo, Peter, Ju, Young Seok, Smid, Marcel, Brinkman, Arie B., Morganella, Sandro, Aure, Miriam R., Lingjærde, Ole Christian, Langerød, Anita, Ringnér, Markus, Ahn, Sung-Min, Boyault, Sandrine, Brock, Jane E., Broeks, Annegien, Butler, Adam, Desmedt, Christine, Dirix, Luc, Dronov, Serge, Fatima, Aquila, Foekens, John A., Gerstung, Moritz, Hooijer, Gerrit K. J., Jang, Se Jin, Jones, David R., Kim, Hyung-Yong, King, Tari A., Krishnamurthy, Savitri, Lee, Hee Jin, Lee, Jeong-Yeon, Li, Yilong, McLaren, Stuart, Menzies, Andrew, Mustonen, Ville, O’Meara, Sarah, Pauporté, Iris, Pivot, Xavier, Purdie, Colin A., Raine, Keiran, Ramakrishnan, Kamna, Rodríguez-González, F. Germán, Romieu, Gilles, Sieuwerts, Anieta M., Simpson, Peter T., Shepherd, Rebecca, Stebbings, Lucy, Stefansson, Olafur A., Teague, Jon, Tommasi, Stefania, Treilleux, Isabelle, Van den Eynden, Gert G., Vermeulen, Peter, Vincent-Salomon, Anne, Yates, Lucy, Caldas, Carlos, Veer, Laura van’t, Tutt, Andrew, Knappskog, Stian, Tan, Benita Kiat Tee, Jonkers, Jos, Borg, Åke, Ueno, Naoto T., Sotiriou, Christos, Viari, Alain, Futreal, P. Andrew, Campbell, Peter J., Span, Paul N., Van Laere, Steven, Lakhani, Sunil R., Eyfjord, Jorunn E., Thompson, Alastair M., Birney, Ewan, Stunnenberg, Hendrik G., van de Vijver, Marc J., Martens, John W. M., Børresen-Dale, Anne-Lise, Richardson, Andrea L., Kong, Gu, Thomas, Gilles, Stratton, Michael R.

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Breast cancer quantitative proteome and proteogenomic landscape von Johansson, Henrik J., Socciarelli, Fabio, Vacanti, Nathaniel M., Haugen, Mads H., Zhu, Yafeng, Siavelis, Ioannis, Fernandez-Woodbridge, Alejandro, Aure, Miriam R., Sennblad, Bengt, Vesterlund, Mattias, Branca, Rui M., Orre, Lukas M., Huss, Mikael, Fredlund, Erik, Beraki, Elsa, Garred, Øystein, Boekel, Jorrit, Sauer, Torill, Zhao, Wei, Nord, Silje, Höglander, Elen K., Jans, Daniel C., Brismar, Hjalmar, Haukaas, Tonje H., Bathen, Tone F., Schlichting, Ellen, Naume, Bjørn, Luders, Torben, Borgen, Elin, Kristensen, Vessela N., Russnes, Hege G., Lingjærde, Ole Christian, Mills, Gordon B., Sahlberg, Kristine K., Børresen-Dale, Anne-Lise, Lehtiö, Janne

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MicroRNA Networks in Breast Cancer Cells von Tahiri, Andliena, Aure, Miriam R., Kristensen, Vessela N.

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Subtype‐specific micro‐RNA expression signatures in breast cancer progression von Haakensen, Vilde D., Nygaard, Vegard, Greger, Liliana, Aure, Miriam R., Fromm, Bastian, Bukholm, Ida R.K., Lüders, Torben, Chin, Suet‐Feung, Git, Anna, Caldas, Carlos, Kristensen, Vessela N., Brazma, Alvis, Børresen‐Dale, Anne‐Lise, Hovig, Eivind, Helland, Åslaug

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LIMT is a novel metastasis inhibiting lncRNA suppressed by EGF and downregulated in aggressive breast cancer von Sas‐Chen, Aldema, Aure, Miriam R, Leibovich, Limor, Carvalho, Silvia, Enuka, Yehoshua, Körner, Cindy, Polycarpou‐Schwarz, Maria, Lavi, Sara, Nevo, Nava, Kuznetsov, Yuri, Yuan, Justin, Azuaje, Francisco, Ulitsky, Igor, Diederichs, Sven, Wiemann, Stefan, Yakhini, Zohar, Kristensen, Vessela N, Børresen‐Dale, Anne‐Lise, Yarden, Yosef, Sauer, Torill, Geisler, Jürgen, Hofvind, Solveig, Bathen, Tone F, Borgen, Elin, Engebråten, Olav, Fodstad, Øystein, Garred, Øystein, Geitvik, Gry Aarum, Kåresen, Rolf, Naume, Bjørn, Mælandsmo, Gunhild Mari, Russnes, Hege G, Schlichting, Ellen, Sørlie, Therese, Lingjærde, Ole Christian, Sahlberg, Kristine Kleivi, Skjerven, Helle Kristine, Fritzman, Britt

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Correction: miRNA-mRNA Integrated Analysis Reveals Roles for miRNAs in Primary Breast Tumors von Enerly, Espen, Steinfeld, Israel, Kleivi, Kristine, Leivonen, Suvi-Katri, Aure, Miriam R., Russnes, Hege G., Rønneberg, Jo Anders, Johnsen, Hilde, Navon, Roy, Rødland, Einar, Mäkelä, Rami, Naume, Bjørn, Perälä, Merja, Kallioniemi, Olli, Kristensen, Vessela N., Yakhini, Zohar, Børresen-Dale, Anne-Lise

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Influence of DNA copy number and mRNA levels on the expression of breast cancer related proteins von Myhre, Simen, Lingjærde, Ole-Christian, Hennessy, Bryan T., Aure, Miriam R., Carey, Mark S., Alsner, Jan, Tramm, Trine, Overgaard, Jens, Mills, Gordon B., Børresen-Dale, Anne-Lise, Sørlie, Therese

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Metabolic clusters of breast cancer in relation to gene- and protein expression subtypes von Haukaas, Tonje H, Euceda, Leslie R, Giskeødegård, Guro F, Lamichhane, Santosh, Krohn, Marit, Jernström, Sandra, Aure, Miriam R, Lingjærde, Ole C, Schlichting, Ellen, Garred, Øystein, Due, Eldri U, Mills, Gordon B, Sahlberg, Kristine K, Børresen-Dale, Anne-Lise, Bathen, Tone F

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Author Correction: Landscape of somatic mutations in 560 breast cancer whole-genome sequences von Nik-Zainal, Serena, Davies, Helen, Staaf, Johan, Ramakrishna, Manasa, Glodzik, Dominik, Zou, Xueqing, Martincorena, Inigo, Alexandrov, Ludmil B., Martin, Sancha, Wedge, David C., Van Loo, Peter, Ju, Young Seok, Smid, Marcel, Brinkman, Arie B., Morganella, Sandro, Aure, Miriam R., Lingjærde, Ole Christian, Langerød, Anita, Ringnér, Markus, Ahn, Sung-Min, Boyault, Sandrine, Brock, Jane E., Broeks, Annegien, Butler, Adam, Desmedt, Christine, Dirix, Luc, Dronov, Serge, Fatima, Aquila, Foekens, John A., Gerstung, Moritz, Hooijer, Gerrit K. J., Jang, Se Jin, Jones, David R., Kim, Hyung-Yong, King, Tari A., Krishnamurthy, Savitri, Lee, Hee Jin, Lee, Jeong-Yeon, Li, Yilong, McLaren, Stuart, Menzies, Andrew, Mustonen, Ville, O’Meara, Sarah, Pauporté, Iris, Pivot, Xavier, Purdie, Colin A., Raine, Keiran, Ramakrishnan, Kamna, Rodríguez-González, F. Germán, Romieu, Gilles, Sieuwerts, Anieta M., Simpson, Peter T., Shepherd, Rebecca, Stebbings, Lucy, Stefansson, Olafur A., Teague, Jon, Tommasi, Stefania, Treilleux, Isabelle, Van den Eynden, Gert G., Vermeulen, Peter, Vincent-Salomon, Anne, Yates, Lucy, Caldas, Carlos, van’t Veer, Laura, Tutt, Andrew, Knappskog, Stian, Tan, Benita Kiat Tee, Jonkers, Jos, Borg, Åke, Ueno, Naoto T., Sotiriou, Christos, Viari, Alain, Futreal, P. Andrew, Campbell, Peter J., Span, Paul N., Van Laere, Steven, Lakhani, Sunil R., Eyfjord, Jorunn E., Thompson, Alastair M., Birney, Ewan, Stunnenberg, Hendrik G., van de Vijver, Marc J., Martens, John W. M., Børresen-Dale, Anne-Lise, Richardson, Andrea L., Kong, Gu, Thomas, Gilles, Stratton, Michael R.

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DNA copy number motifs are strong and independent predictors of survival in breast cancer von Pladsen, Arne V., Nilsen, Gro, Rueda, Oscar M., Aure, Miriam R., Borgan, Ørnulf, Liestøl, Knut, Vitelli, Valeria, Frigessi, Arnoldo, Langerød, Anita, Mathelier, Anthony, Engebråten, Olav, Kristensen, Vessela, Wedge, David C., Van Loo, Peter, Caldas, Carlos, Børresen-Dale, Anne-Lise, Russnes, Hege G., Lingjærde, Ole Christian

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The repertoire of mutational signatures in human cancer von Alexandrov, Ludmil B., Kim, Jaegil, Haradhvala, Nicholas J., Huang, Mi Ni, Tian Ng, Alvin Wei, Wu, Yang, Boot, Arnoud, Covington, Kyle R., Gordenin, Dmitry A., Bergstrom, Erik N., Islam, S. M. Ashiqul, Lopez-Bigas, Nuria, Klimczak, Leszek J., McPherson, John R., Morganella, Sandro, Sabarinathan, Radhakrishnan, Wheeler, David A., Mustonen, Ville, Getz, Gad, Rozen, Steven G., Stratton, Michael R.

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Pan-cancer analysis of whole genomes von Campbell, Peter J., Getz, Gad, Korbel, Jan O., Stuart, Joshua M., Jennings, Jennifer L., Stein, Lincoln D., Perry, Marc D., Nahal-Bose, Hardeep K., Ouellette, B. F. Francis, Li, Constance H., Rheinbay, Esther, Nielsen, G. Petur, Sgroi, Dennis C., Wu, Chin-Lee, Faquin, William C., Deshpande, Vikram, Boutros, Paul C., Lazar, Alexander J., Hoadley, Katherine A., Louis, David N., Dursi, L. Jonathan, Yung, Christina K., Bailey, Matthew H., Saksena, Gordon, Raine, Keiran M., Buchhalter, Ivo, Kleinheinz, Kortine, Schlesner, Matthias, Zhang, Junjun, Wang, Wenyi, Wheeler, David A., Ding, Li, Simpson, Jared T., O'Connor, Brian D., Yakneen, Sergei, Ellrott, Kyle, Miyoshi, Naoki, Butler, Adam P., Royo, Romina, Shorser, Solomon, Vazquez, Miguel, Rausch, Tobias, Tiao, Grace, Waszak, Sebastian M., Rodriguez-Martin, Bernardo, Shringarpure, Suyash, Wu, Dai-Ying, Demidov, German M., Delaneau, Olivier, Hayashi, Shuto, Imoto, Seiya, Habermann, Nina, Segre, Ayellet, Garrison, Erik, Cafferkey, Andy, Alvarez, Eva G., Maria Heredia-Genestar, Jose, Muyas, Francesc, Drechsel, Oliver, Bruzos, Alicia L., Temes, Javier, Zamora, Jorge, Baez-Ortega, Adrian, Kim, Hyung-Lae, Mashl, R. Jay, Ye, Kai, DiBiase, Anthony, Huang, Kuan-lin, Letunic, Ivica, McLellan, Michael D., Newhouse, Steven J., Shmaya, Tal, Kumar, Sushant, Wedge, David C., Wright, Mark H., Yellapantula, Venkata D., Gerstein, Mark, Khurana, Ekta, Marques-Bonet, Tomas, Navarro, Arcadi, Bustamante, Carlos D., Siebert, Reiner, Nakagawa, Hidewaki, Easton, Douglas F., Ossowski, Stephan, Tubio, Jose M. C., De La Vega, Francisco M., Estivill, Xavier, Yuen, Denis, Mihaiescu, George L., Omberg, Larsson, Ferretti, Vincent, Sabarinathan, Radhakrishnan, Pich, Oriol, Gonzalez-Perez, Abel, Weiner, Amaro Taylor, Fittall, Matthew W., Demeulemeester, Jonas, Tarabichi, Maxime, Roberts, Nicola D.

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Comprehensive molecular characterization of mitochondrial genomes in human cancers von Yuan, Yuan, Ju, Young Seok, Kim, Youngwook, Li, Jun, Wang, Yumeng, Yoon, Christopher J., Yang, Yang, Martincorena, Inigo, Creighton, Chad J., Weinstein, John N., Xu, Yanxun, Han, Leng, Kim, Hyung-Lae, Nakagawa, Hidewaki, Park, Keunchil, Campbell, Peter J., Liang, Han

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The landscape of viral associations in human cancers von Zapatka, Marc, Borozan, Ivan, Brewer, Daniel S., Iskar, Murat, Grundhoff, Adam, Alawi, Malik, Desai, Nikita, Sültmann, Holger, Moch, Holger, Cooper, Colin S., Eils, Roland, Ferretti, Vincent, Lichter, Peter

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A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns von Jiao, Wei, Atwal, Gurnit, Polak, Paz, Karlic, Rosa, Cuppen, Edwin, Danyi, Alexandra, de Ridder, Jeroen, van Herpen, Carla, Lolkema, Martijn P., Steeghs, Neeltje, Getz, Gad, Morris, Quaid D., Stein, Lincoln D.

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Divergent mutational processes distinguish hypoxic and normoxic tumours von Bhandari, Vinayak, Li, Constance H., Bristow, Robert G., Boutros, Paul C.

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