Genome sequence-based species delimitation with confidence intervals and improved distance functions von Meier-Kolthoff, Jan P, Auch, Alexander F, Klenk, Hans-Peter, Göker, Markus

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MEGAN analysis of metagenomic data von Huson, Daniel H, Auch, Alexander F, Qi, Ji, Schuster, Stephan C

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MetaSim: a sequencing simulator for genomics and metagenomics von Richter, Daniel C, Ott, Felix, Auch, Alexander F, Schmid, Ramona, Huson, Daniel H

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Methods for comparative metagenomics von Huson, Daniel H, Richter, Daniel C, Mitra, Suparna, Auch, Alexander F, Schuster, Stephan C

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Metagenomics to Paleogenomics: Large-Scale Sequencing of Mammoth DNA von Poinar, Hendrik N, Schwarz, Carsten, Qi, Ji, Shapiro, Beth, MacPhee, Ross D. E, Buigues, Bernard, Tikhonov, Alexei, Huson, Daniel H, Tomsho, Lynn P, Auch, Alexander, Rampp, Markus, Miller, Webb, Schuster, Stephan C

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Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences von Auch, Alexander F, Henz, Stefan R, Holland, Barbara R, Göker, Markus

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CopyCat : cophylogenetic analysis tool von Meier-Kolthoff, Jan P., Auch, Alexander F., Huson, Daniel H., Göker, Markus

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Whole-genome prokaryotic phylogeny von Henz, Stefan R., Huson, Daniel H., Auch, Alexander F., Nieselt-Struwe, Kay, Schuster, Stephan C.

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AxPcoords & parallel AxParafit: statistical co-phylogenetic analyses on thousands of taxa von Stamatakis, Alexandros, Auch, Alexander F, Meier-Kolthoff, Jan, Göker, Markus

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Highly parallelized inference of large genome-based phylogenies von Meier-Kolthoff, Jan P., Auch, Alexander F., Klenk, Hans-Peter, Göker, Markus

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Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison von Auch, Alexander F, von Jan, Mathias, Klenk, Hans-Peter, Göker, Markus

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Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs von Auch, Alexander F, Klenk, Hans-Peter, Göker, Markus

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A Clustering Optimization Strategy for Molecular Taxonomy Applied to Planktonic Foraminifera SSU rDNA von Göker, Markus, Grimm, Guido W, Auch, Alexander F, Aurahs, Ralf, Kučera, Michal

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Large-Scale Co-Phylogenetic Analysis on the Grid von Stockinger, Heinz, Auch, Alexander F, Göker, Markus, Meier-Kolthoff, Jan, Stamatakis, Alexandros

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C opy C at  : cophylogenetic analysis tool von Meier-Kolthoff, Jan P., Auch, Alexander F., Huson, Daniel H., Göker, Markus

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MetaSim: A Sequencing Simulator for Genomics and Metagenomics von Richter, Daniel C, Ott, Felix, Auch, Alexander F, Schmid, Ramona, Huson, Daniel H

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A Clustering Optimization Strategy for Molecular Taxonomy Applied to Planktonic Foraminifera SSU rDNA von Markus Göker, Guido W. Grimm, Alexander F. Auch, Ralf Aurahs, Michal Kučera

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AxPcoords & parallel AxParafit: statistical co-phylogenetic analyses on thousands of taxa-1 von Stamatakis, Alexandros, Auch, Alexander F, Meier-Kolthoff, Jan, Göker, Markus

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AxPcoords & parallel AxParafit: statistical co-phylogenetic analyses on thousands of taxa-0 von Stamatakis, Alexandros, Auch, Alexander F, Meier-Kolthoff, Jan, Göker, Markus

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Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences-2 von Auch, Alexander F, Henz, Stefan R, Holland, Barbara R, Göker, Markus

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