Ribosome profiling of HEK293T cells overexpressing codon optimized coagulation factor IX [version 2; peer review: 3 approved] von Alexaki, Aikaterini, Kames, Jacob, Hettiarachchi, Gaya K, Athey, John C, Katneni, Upendra K, Hunt, Ryan C, Hamasaki-Katagiri, Nobuko, Holcomb, David D, DiCuccio, Michael, Bar, Haim, Komar, Anton A, Kimchi-Sarfaty, Chava

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TissueCoCoPUTs: Novel Human Tissue-Specific Codon and Codon-Pair Usage Tables Based on Differential Tissue Gene Expression von Kames, Jacob, Alexaki, Aikaterini, Holcomb, David D., Santana-Quintero, Luis V., Athey, John C., Hamasaki-Katagiri, Nobuko, Katneni, Upendra, Golikov, Anton, Ibla, Juan C., Bar, Haim, Kimchi-Sarfaty, Chava

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Effects of codon optimization on coagulation factor IX translation and structure: Implications for protein and gene therapies von Alexaki, Aikaterini, Hettiarachchi, Gaya K., Athey, John C., Katneni, Upendra K., Simhadri, Vijaya, Hamasaki-Katagiri, Nobuko, Nanavaty, Puja, Lin, Brian, Takeda, Kazuyo, Freedberg, Darón, Monroe, Dougald, McGill, Joseph R., Peters, Robert, Kames, Jacob M., Holcomb, David D., Hunt, Ryan C., Sauna, Zuben E., Gelinas, Amy, Janjic, Nebojsa, DiCuccio, Michael, Bar, Haim, Komar, Anton A., Kimchi-Sarfaty, Chava

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Translational and transcriptional responses in human primary hepatocytes under hypoxia von Hettiarachchi, Gaya K, Katneni, Upendra K, Hunt, Ryan C, Kames, Jacob M, Athey, John C, Bar, Haim, Sauna, Zuben E, McGill, Joseph R, Ibla, Juan C, Kimchi-Sarfaty, Chava

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Structural, functional, and immunogenicity implications of F9 gene recoding von Katneni, Upendra K., Alexaki, Aikaterini, Hunt, Ryan C., Hamasaki-Katagiri, Nobuko, Hettiarachchi, Gaya K., Kames, Jacob M., McGill, Joseph R., Holcomb, David D., Athey, John C., Lin, Brian, Parunov, Leonid A., Kafri, Tal, Lu, Qi, Peters, Robert, Ovanesov, Mikhail V., Freedberg, Darón I., Bar, Haim, Komar, Anton A., Sauna, Zuben E., Kimchi-Sarfaty, Chava

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Ribosome profiling of HEK293T cells overexpressing codon optimized coagulation factor IX [version 1; peer review: 3 approved with reservations] von Alexaki, Aikaterini, Kames, Jacob, Hettiarachchi, Gaya K, Athey, John C, Katneni, Upendra K, Hunt, Ryan C, Hamasaki-Katagiri, Nobuko, Holcomb, David D, DiCuccio, Michael, Bar, Haim, Komar, Anton A, Kimchi-Sarfaty, Chava

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Complete Genome Sequence of Spiroplasma kunkelii Strain CR2-3x, Causal Agent of Corn Stunt Disease in Zea mays L von Davis, Robert E, Shao, Jonathan, Dally, Ellen L, Zhao, Yan, Gasparich, Gail E, Gaynor, Brady J, Athey, John C, Harrison, Nigel A, Donofrio, Nicole

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Antibody responses and correlates of protection in the general population after two doses of the ChAdOx1 or BNT162b2 vaccines von Wei, Jia, Pouwels, Koen B., Stoesser, Nicole, Matthews, Philippa C., Diamond, Ian, Studley, Ruth, Rourke, Emma, Cook, Duncan, Bell, John I., Newton, John N., Farrar, Jeremy, Howarth, Alison, Marsden, Brian D., Hoosdally, Sarah, Jones, E. Yvonne, Stuart, David I., Crook, Derrick W., Peto, Tim E. A., Walker, A. Sarah, Eyre, David W.

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Anti-spike antibody response to natural SARS-CoV-2 infection in the general population von Wei, Jia, Matthews, Philippa C., Stoesser, Nicole, Maddox, Thomas, Lorenzi, Luke, Studley, Ruth, Bell, John I., Newton, John N., Farrar, Jeremy, Diamond, Ian, Rourke, Emma, Howarth, Alison, Marsden, Brian D., Hoosdally, Sarah, Jones, E. Yvonne, Stuart, David I., Crook, Derrick W., Peto, Tim E. A., Pouwels, Koen B., Walker, A. Sarah, Eyre, David W.

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Antibody responses to SARS-CoV-2 vaccines in 45,965 adults from the general population of the United Kingdom von Wei, Jia, Stoesser, Nicole, Matthews, Philippa C., Ayoubkhani, Daniel, Studley, Ruth, Bell, Iain, Bell, John I., Newton, John N., Farrar, Jeremy, Diamond, Ian, Rourke, Emma, Howarth, Alison, Marsden, Brian D., Hoosdally, Sarah, Jones, E. Yvonne, Stuart, David I., Crook, Derrick W., Peto, Tim E. A., Pouwels, Koen B., Eyre, David W., Walker, A. Sarah

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Variations in the Care of HIV-Infected Adults in the United States: Results From the HIV Cost and Services Utilization Study von Shapiro, Martin F, Morton, Sally C, McCaffrey, Daniel F, Senterfitt, J. Walton, Fleishman, John A, Perlman, Judith F, Athey, Leslie A, Keesey, Joan W, Goldman, Dana P, Berry, Sandra H, Bozzette, Samuel A, Additional Authors From the HCSUS Consortium

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Protection against SARS-CoV-2 Omicron BA.4/5 variant following booster vaccination or breakthrough infection in the UK von Wei, Jia, Matthews, Philippa C., Stoesser, Nicole, Newton, John N., Diamond, Ian, Studley, Ruth, Taylor, Nick, Bell, John I., Farrar, Jeremy, Kolenchery, Jaison, Marsden, Brian D., Hoosdally, Sarah, Jones, E. Yvonne, Stuart, David I., Crook, Derrick W., Peto, Tim E. A., Walker, A. Sarah, Pouwels, Koen B., Eyre, David W.

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Community prevalence of SARS-CoV-2 in England from April to November, 2020: results from the ONS Coronavirus Infection Survey von Pouwels, Koen B, House, Thomas, Pritchard, Emma, Robotham, Julie V, Birrell, Paul J, Gelman, Andrew, Vihta, Karina-Doris, Bowers, Nikola, Boreham, Ian, Thomas, Heledd, Bell, Iain, Bell, John I, Newton, John N, Farrar, Jeremy, Benton, Pete, Walker, Ann Sarah, Pouwels, Koen B., Crook, Derrick, Matthews, Philippa C., Peto, Tim, Pritchard, Emma, Stoesser, Nicole, Vihta, Karina-Doris, Howarth, Alison, Doherty, George, Kavanagh, James, Chau, Kevin K., Martins Ferreira, Lucas, Marsden, Brian D., Mongkolsapaya, Juthathip, Cornall, Richard, Stuart, David I., Screaton, Gavin, Bell, John, Cox, Stuart, Paddon, Kevin, James, Tim, House, Thomas, Newton, John N., Birrell, Paul, Sheppard, Tim, Athey, Graham, Moody, Dan, Curry, Leigh, Brereton, Pamela, Hay, Jodie, Vansteenhouse, Harper, Benton, Pete, Rourke, Emma, Henry, Sarah, Scruton, James, Stokes, Peter, Thomas, Tina, Allen, John, Black, Russell, Bovill, Heather, Braunholtz, David, Brown, Dominic, Collyer, Sarah, Crees, Megan, Daglish, Colin, Davies, Byron, Donnarumma, Hannah, Douglas-Mann, Julia, Felton, Antonio, Finselbach, Hannah, Fordham, Eleanor, Ipser, Alberta, Jenkins, Joe, Kent, Katherine, Kerai, Geeta, Lloyd, Lina, Masding, Victoria, Osborn, Ellie, Patel, Alpi, Pereira, Elizabeth, Pett, Tristan, Reeve, Donna, Shah, Palvi, Snook, Ruth, Studley, Ruth, Sutherland, Esther, Swinn, Eliza, Thomas, Heledd, Tudor, Anna, Weston, Joshua, Leib, Shayla, Tierney, James, Farkas, Gabor, Cobb, Raf, Compton, Lewis, Irving, James, Clarke, John, Mullis, Rachel, Ireland, Lorraine, Airimitoaie, Diana, Fisher, Sarah, Moore, Zoe, McLean, James, Kerby, Matt

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Risk of SARS-CoV-2 reinfection during multiple Omicron variant waves in the UK general population von Wei, Jia, Stoesser, Nicole, Matthews, Philippa C., Khera, Tarnjit, Gethings, Owen, Diamond, Ian, Studley, Ruth, Taylor, Nick, Peto, Tim E. A., Walker, A. Sarah, Pouwels, Koen B., Eyre, David W.

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Symptoms and Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Positivity in the General Population in the United Kingdom von Vihta, Karina Doris, Pouwels, Koen B, Peto, Tim E A, Pritchard, Emma, Eyre, David W, House, Thomas, Gethings, Owen, Studley, Ruth, Rourke, Emma, Cook, Duncan, Diamond, Ian, Crook, Derrick, Matthews, Philippa C, Stoesser, Nicole, Walker, Ann Sarah

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Improving the representativeness of UK’s national COVID-19 Infection Survey through spatio-temporal regression and post-stratification von Pouwels, Koen B., Eyre, David W., House, Thomas, Aspey, Ben, Matthews, Philippa C., Stoesser, Nicole, Newton, John N., Diamond, Ian, Studley, Ruth, Taylor, Nick G. H., Bell, John I., Farrar, Jeremy, Kolenchery, Jaison, Marsden, Brian D., Hoosdally, Sarah, Jones, E. Yvonne, Stuart, David I., Crook, Derrick W., Peto, Tim E. A., Walker, A. Sarah

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SARS-CoV-2 antibody trajectories after a single COVID-19 vaccination with and without prior infection von Wei, Jia, Matthews, Philippa C., Stoesser, Nicole, Diamond, Ian, Studley, Ruth, Rourke, Emma, Cook, Duncan, Bell, John I., Newton, John N., Farrar, Jeremy, Howarth, Alison, Marsden, Brian D., Hoosdally, Sarah, Jones, E. Yvonne, Stuart, David I., Crook, Derrick W., Peto, Tim E. A., Walker, A. Sarah, Eyre, David W., Pouwels, Koen B.

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A Prototype Antibody-based Biosensor for Measurement of Salivary MMP-8 in Periodontitis using Surface Acoustic Wave Technology von Taylor, John J., Jaedicke, Katrin M., van de Merwe, Rachel C., Bissett, Susan M., Landsdowne, Nichola, Whall, Kerry M., Pickering, Kimberley, Thornton, Vivienne, Lawson, Victoria, Yatsuda, Hiromi, Kogai, Takashi, Shah, Deepan, Athey, Dale, Preshaw, Philip M.

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COVID-19 vaccination, risk-compensatory behaviours, and contacts in the UK von Buckell, John, Jones, Joel, Matthews, Philippa C., Diamond, Sir Ian, Rourke, Emma, Studley, Ruth, Cook, Duncan, Walker, Ann Sarah, Pouwels, Koen B.

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The Care of HIV-Infected Adults in the United States von Bozzette, Samuel A, Berry, Sandra H, Duan, Naihua, Frankel, Martin R, Leibowitz, Arleen A, Lefkowitz, Doris, Emmons, Carol-Ann, Senterfitt, J. Walton, Berk, Marc L, Morton, Sally C, Shapiro, Martin F, Andersen, Ronald M, Cunningham, William E, Marcus, Marvin, Wenger, Neil S, Athey, Leslie A, Smith, Stephen M, Bing, Eric G, Brown, Julie A, Burnham, M. Audrey, Goldman, Dana P, Kanouse, David E, Keesey, Joan W, McCaffrey, Daniel F, Perlman, Judith F, Schuster, Mark A, Cleary, Paul D, Fleishman, John A, Hays, Ron D, McCutchan, J. Allan, Richman, Douglas

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