The Aging Metabolome—Biomarkers to Hub Metabolites von Sharma, Rishi, Ramanathan, Arvind

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Direct control of mitochondrial function by mTOR von Ramanathan, Arvind, Schreiber, Stuart L

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Deep clustering of protein folding simulations von Bhowmik, Debsindhu, Gao, Shang, Young, Michael T, Ramanathan, Arvind

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Oxylipin biosynthesis reinforces cellular senescence and allows detection of senolysis von Wiley, Christopher D., Sharma, Rishi, Davis, Sonnet S., Lopez-Dominguez, Jose Alberto, Mitchell, Kylie P., Wiley, Samantha, Alimirah, Fatouma, Kim, Dong Eun, Payne, Therese, Rosko, Andrew, Aimontche, Eliezer, Deshpande, Sharvari M., Neri, Francesco, Kuehnemann, Chisaka, Demaria, Marco, Ramanathan, Arvind, Campisi, Judith

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Evolutionarily conserved linkage between enzyme fold, flexibility, and catalysis von Ramanathan, Arvind, Agarwal, Pratul K

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Machine learning-driven multiscale modeling reveals lipid-dependent dynamics of RAS signaling proteins von Ingólfsson, Helgi I, Neale, Chris, Carpenter, Timothy S, Shrestha, Rebika, López, Cesar A, Tran, Timothy H, Oppelstrup, Tomas, Bhatia, Harsh, Stanton, Liam G, Zhang, Xiaohua, Sundram, Shiv, Di Natale, Francesco, Agarwal, Animesh, Dharuman, Gautham, Kokkila Schumacher, Sara I L, Turbyville, Thomas, Gulten, Gulcin, Van, Que N, Goswami, Debanjan, Jean-Francois, Frantz, Agamasu, Constance, Chen, De, Hettige, Jeevapani J, Travers, Timothy, Sarkar, Sumantra, Surh, Michael P, Yang, Yue, Moody, Adam, Liu, Shusen, Van Essen, Brian C, Voter, Arthur F, Ramanathan, Arvind, Hengartner, Nicolas W, Simanshu, Dhirendra K, Stephen, Andrew G, Bremer, Peer-Timo, Gnanakaran, S, Glosli, James N, Lightstone, Felice C, McCormick, Frank, Nissley, Dwight V, Streitz, Frederick H

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Categorical dimensions of human odor descriptor space revealed by non-negative matrix factorization von Castro, Jason B, Ramanathan, Arvind, Chennubhotla, Chakra S

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Senescent cells inhibit mouse myoblast differentiation via the SASP-lipid 15d-PGJ2 mediated modification and control of HRas von Pundlik, Swarang Sachin, Barik, Alok, Venkateshvaran, Ashwin, Sahoo, Snehasudha Subhadarshini, Jaysingh, Mahapatra Anshuman, Math, Raviswamy GH, Lal, Heera, Hashmi, Maroof Athar, Ramanathan, Arvind

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A Small Molecule Causes a Population Shift in the Conformational Landscape of an Intrinsically Disordered Protein von Ban, David, Iconaru, Luigi I, Ramanathan, Arvind, Zuo, Jian, Kriwacki, Richard W

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AI-driven multiscale simulations illuminate mechanisms of SARS-CoV-2 spike dynamics von Casalino, Lorenzo, Dommer, Abigail C, Gaieb, Zied, Barros, Emilia P, Sztain, Terra, Ahn, Surl-Hee, Trifan, Anda, Brace, Alexander, Bogetti, Anthony T, Clyde, Austin, Ma, Heng, Lee, Hyungro, Turilli, Matteo, Khalid, Syma, Chong, Lillian T, Simmerling, Carlos, Hardy, David J, Maia, Julio DC, Phillips, James C, Kurth, Thorsten, Stern, Abraham C, Huang, Lei, McCalpin, John D, Tatineni, Mahidhar, Gibbs, Tom, Stone, John E, Jha, Shantenu, Ramanathan, Arvind, Amaro, Rommie E

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Protein Conformational Populations and Functionally Relevant Substates von Ramanathan, Arvind, Savol, Andrej, Burger, Virginia, Chennubhotla, Chakra S, Agarwal, Pratul K

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Model certainty in cellular network-driven processes with missing data von Irvin, Michael W, Ramanathan, Arvind, Lopez, Carlos F

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Digital technology in craniofacial surgery – Historical perspectives to current applications von Kumari, Thushara, Ramanathan, Arvind

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AI-accelerated protein-ligand docking for SARS-CoV-2 is 100-fold faster with no significant change in detection von Clyde, Austin, Liu, Xuefeng, Brettin, Thomas, Yoo, Hyunseung, Partin, Alexander, Babuji, Yadu, Blaiszik, Ben, Mohd-Yusof, Jamaludin, Merzky, Andre, Turilli, Matteo, Jha, Shantenu, Ramanathan, Arvind, Stevens, Rick

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Perturbational Profiling of a Cell-Line Model of Tumorigenesis by Using Metabolic Measurements von Ramanathan, Arvind, Wang, Connie, Schreiber, Stuart L.

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Using case-level context to classify cancer pathology reports von Gao, Shang, Alawad, Mohammed, Schaefferkoetter, Noah, Penberthy, Lynne, Wu, Xiao-Cheng, Durbin, Eric B, Coyle, Linda, Ramanathan, Arvind, Tourassi, Georgia

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Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards von Torta, Federico, Hoffmann, Nils, Burla, Bo, Alecu, Irina, Arita, Makoto, Bamba, Takeshi, Bennett, Steffany A. L., Bertrand-Michel, Justine, Brügger, Britta, Cala, Mónica P., Camacho-Muñoz, Dolores, Checa, Antonio, Chen, Michael, Chocholoušková, Michaela, Cinel, Michelle, Chu-Van, Emeline, Colsch, Benoit, Coman, Cristina, Connell, Lisa, Sousa, Bebiana C., Dickens, Alex M., Fedorova, Maria, Eiríksson, Finnur Freyr, Gallart-Ayala, Hector, Ghorasaini, Mohan, Giera, Martin, Guan, Xue Li, Haid, Mark, Hankemeier, Thomas, Harms, Amy, Höring, Marcus, Holčapek, Michal, Hornemann, Thorsten, Hu, Chunxiu, Hülsmeier, Andreas J., Huynh, Kevin, Jones, Christina M., Ivanisevic, Julijana, Izumi, Yoshihiro, Köfeler, Harald C., Lam, Sin Man, Lange, Mike, Lee, Jong Cheol, Liebisch, Gerhard, Lippa, Katrice, Lopez-Clavijo, Andrea F., Manzi, Malena, Martinefski, Manuela R., Math, Raviswamy G. H., Mayor, Satyajit, Meikle, Peter J., Monge, María Eugenia, Moon, Myeong Hee, Muralidharan, Sneha, Nicolaou, Anna, Nguyen-Tran, Thao, O’Donnell, Valerie B., Orešič, Matej, Ramanathan, Arvind, Riols, Fabien, Saigusa, Daisuke, Schock, Tracey B., Schwartz-Zimmermann, Heidi, Shui, Guanghou, Singh, Madhulika, Takahashi, Masatomo, Thorsteinsdóttir, Margrét, Tomiyasu, Noriyuki, Tournadre, Anthony, Tsugawa, Hiroshi, Tyrrell, Victoria J., van der Gugten, Grace, Wakelam, Michael O., Wheelock, Craig E., Wolrab, Denise, Xu, Guowang, Xu, Tianrun, Bowden, John A., Ekroos, Kim, Ahrends, Robert, Wenk, Markus R.

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A Drosophila model identifies a critical role for zinc in mineralization for kidney stone disease von Chi, Thomas, Kim, Man Su, Lang, Sven, Bose, Neelanjan, Kahn, Arnold, Flechner, Lawrence, Blaschko, Sarah D, Zee, Tiffany, Muteliefu, Gulinuer, Bond, Nichole, Kolipinski, Marysia, Fakra, Sirine C, Mandel, Neil, Miller, Joe, Ramanathan, Arvind, Killilea, David W, Brückner, Katja, Kapahi, Pankaj, Stoller, Marshall L

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Closure of long‐standing oroantral fistula: Surgical challenge in medically compromised patient—A case report von Ramanathan, Arvind, Acharya, Vishak

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GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics von Zvyagin, Maxim, Brace, Alexander, Hippe, Kyle, Deng, Yuntian, Zhang, Bin, Bohorquez, Cindy Orozco, Clyde, Austin, Kale, Bharat, Perez-Rivera, Danilo, Ma, Heng, Mann, Carla M., Irvin, Michael, Ozgulbas, Defne G., Vassilieva, Natalia, Pauloski, James Gregory, Ward, Logan, Hayot-Sasson, Valerie, Emani, Murali, Foreman, Sam, Xie, Zhen, Lin, Diangen, Shukla, Maulik, Nie, Weili, Romero, Josh, Dallago, Christian, Vahdat, Arash, Xiao, Chaowei, Gibbs, Thomas, Foster, Ian, Davis, James J., Papka, Michael E., Brettin, Thomas, Stevens, Rick, Anandkumar, Anima, Vishwanath, Venkatram, Ramanathan, Arvind

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