Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa von Viana, Raquel, Moyo, Sikhulile, Amoako, Daniel G., Tegally, Houriiyah, Scheepers, Cathrine, Althaus, Christian L., Anyaneji, Ugochukwu J., Bester, Phillip A., Boni, Maciej F., Chand, Mohammed, Choga, Wonderful T., Colquhoun, Rachel, Davids, Michaela, Deforche, Koen, Doolabh, Deelan, du Plessis, Louis, Engelbrecht, Susan, Everatt, Josie, Giandhari, Jennifer, Giovanetti, Marta, Hardie, Diana, Hill, Verity, Hsiao, Nei-Yuan, Iranzadeh, Arash, Ismail, Arshad, Joseph, Charity, Joseph, Rageema, Koopile, Legodile, Kosakovsky Pond, Sergei L., Kraemer, Moritz U. G., Kuate-Lere, Lesego, Laguda-Akingba, Oluwakemi, Lesetedi-Mafoko, Onalethatha, Lessells, Richard J., Lockman, Shahin, Lucaci, Alexander G., Maharaj, Arisha, Mahlangu, Boitshoko, Maponga, Tongai, Mahlakwane, Kamela, Makatini, Zinhle, Marais, Gert, Maruapula, Dorcas, Masupu, Kereng, Matshaba, Mogomotsi, Mayaphi, Simnikiwe, Mbhele, Nokuzola, Mbulawa, Mpaphi B., Mendes, Adriano, Mlisana, Koleka, Mnguni, Anele, Mohale, Thabo, Moir, Monika, Moruisi, Kgomotso, Mosepele, Mosepele, Motsatsi, Gerald, Motswaledi, Modisa S., Mphoyakgosi, Thongbotho, Msomi, Nokukhanya, Mwangi, Peter N., Naidoo, Yeshnee, Ntuli, Noxolo, Nyaga, Martin, Olubayo, Lucier, Pillay, Sureshnee, Radibe, Botshelo, Ramphal, Yajna, Ramphal, Upasana, San, James E., Scott, Lesley, Shapiro, Roger, Singh, Lavanya, Smith-Lawrence, Pamela, Stevens, Wendy, Strydom, Amy, Subramoney, Kathleen, Tebeila, Naume, Tshiabuila, Derek, Tsui, Joseph, van Wyk, Stephanie, Weaver, Steven, Wibmer, Constantinos K., Wilkinson, Eduan, Wolter, Nicole, Zarebski, Alexander E., Zuze, Boitumelo, Goedhals, Dominique, Preiser, Wolfgang, Treurnicht, Florette, Venter, Marietje, Williamson, Carolyn, Pybus, Oliver G., Bhiman, Jinal, Glass, Allison, Martin, Darren P., Rambaut, Andrew, Gaseitsiwe, Simani, von Gottberg, Anne, de Oliveira, Tulio

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Detection of a SARS-CoV-2 variant of concern in South Africa von Tegally, Houriiyah, Wilkinson, Eduan, Giovanetti, Marta, Iranzadeh, Arash, Fonseca, Vagner, Giandhari, Jennifer, Doolabh, Deelan, Pillay, Sureshnee, San, Emmanuel James, Msomi, Nokukhanya, Mlisana, Koleka, von Gottberg, Anne, Walaza, Sibongile, Allam, Mushal, Ismail, Arshad, Mohale, Thabo, Glass, Allison J., Engelbrecht, Susan, Van Zyl, Gert, Preiser, Wolfgang, Petruccione, Francesco, Sigal, Alex, Hardie, Diana, Marais, Gert, Hsiao, Nei-yuan, Korsman, Stephen, Davies, Mary-Ann, Tyers, Lynn, Mudau, Innocent, York, Denis, Maslo, Caroline, Goedhals, Dominique, Abrahams, Shareef, Laguda-Akingba, Oluwakemi, Alisoltani-Dehkordi, Arghavan, Godzik, Adam, Wibmer, Constantinos Kurt, Sewell, Bryan Trevor, Lourenço, José, Alcantara, Luiz Carlos Junior, Kosakovsky Pond, Sergei L., Weaver, Steven, Martin, Darren, Lessells, Richard J., Bhiman, Jinal N., Williamson, Carolyn, de Oliveira, Tulio

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Early assessment of the clinical severity of the SARS-CoV-2 omicron variant in South Africa: a data linkage study von Wolter, Nicole, Jassat, Waasila, Walaza, Sibongile, Welch, Richard, Moultrie, Harry, Groome, Michelle, Amoako, Daniel Gyamfi, Everatt, Josie, Bhiman, Jinal N, Scheepers, Cathrine, Tebeila, Naume, Chiwandire, Nicola, du Plessis, Mignon, Govender, Nevashan, Ismail, Arshad, Glass, Allison, Mlisana, Koleka, Stevens, Wendy, Treurnicht, Florette K, Makatini, Zinhle, Hsiao, Nei-yuan, Parboosing, Raveen, Wadula, Jeannette, Hussey, Hannah, Davies, Mary-Ann, Boulle, Andrew, von Gottberg, Anne, Cohen, Cheryl

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Exploration and comparison of bacterial communities present in bovine faeces, milk and blood using 16S rRNA metagenomic sequencing von Mtshali, Khethiwe, Khumalo, Zamantungwa Thobeka Happiness, Kwenda, Stanford, Arshad, Ismail, Thekisoe, Oriel Matlahane Molifi

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Emergence of SARS-CoV-2 Omicron lineages BA.4 and BA.5 in South Africa von Tegally, Houriiyah, Moir, Monika, Everatt, Josie, Giovanetti, Marta, Scheepers, Cathrine, Wilkinson, Eduan, Subramoney, Kathleen, Makatini, Zinhle, Moyo, Sikhulile, Amoako, Daniel G., Baxter, Cheryl, Althaus, Christian L., Anyaneji, Ugochukwu J., Kekana, Dikeledi, Viana, Raquel, Giandhari, Jennifer, Lessells, Richard J., Maponga, Tongai, Maruapula, Dorcas, Choga, Wonderful, Matshaba, Mogomotsi, Mbulawa, Mpaphi B., Msomi, Nokukhanya, Naidoo, Yeshnee, Pillay, Sureshnee, Sanko, Tomasz Janusz, San, James E., Scott, Lesley, Singh, Lavanya, Magini, Nonkululeko A., Smith-Lawrence, Pamela, Stevens, Wendy, Dor, Graeme, Tshiabuila, Derek, Wolter, Nicole, Preiser, Wolfgang, Treurnicht, Florette K., Venter, Marietjie, Chiloane, Georginah, McIntyre, Caitlyn, O’Toole, Aine, Ruis, Christopher, Peacock, Thomas P., Roemer, Cornelius, Kosakovsky Pond, Sergei L., Williamson, Carolyn, Pybus, Oliver G., Bhiman, Jinal N., Glass, Allison, Martin, Darren P., Jackson, Ben, Rambaut, Andrew, Laguda-Akingba, Oluwakemi, Gaseitsiwe, Simani, von Gottberg, Anne, de Oliveira, Tulio

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Clinical severity of SARS-CoV-2 Omicron BA.4 and BA.5 lineages compared to BA.1 and Delta in South Africa von Wolter, Nicole, Jassat, Waasila, Walaza, Sibongile, Welch, Richard, Moultrie, Harry, Groome, Michelle J., Amoako, Daniel Gyamfi, Everatt, Josie, Bhiman, Jinal N., Scheepers, Cathrine, Tebeila, Naume, Chiwandire, Nicola, du Plessis, Mignon, Govender, Nevashan, Ismail, Arshad, Glass, Allison, Mlisana, Koleka, Stevens, Wendy, Treurnicht, Florette K., Subramoney, Kathleen, Makatini, Zinhle, Hsiao, Nei-yuan, Parboosing, Raveen, Wadula, Jeannette, Hussey, Hannah, Davies, Mary-Ann, Boulle, Andrew, von Gottberg, Anne, Cohen, Cheryl

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Detection and genome characterization of Middelburg virus strains isolated from CSF and whole blood samples of humans with neurological manifestations in South Africa von Fourie, Isabel, Williams, June, Ismail, Arshad, Jansen van Vuren, Petrus, Stoltz, Anton, Venter, Marietjie

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Ward-specific clustering of methicillin-resistant Staphylococcus aureus spa-type t037 and t045 in two hospitals in South Africa: 2013 to 2017 von Strasheim, Wilhelmina, Perovic, Olga, Singh-Moodley, Ashika, Kwanda, Stanford, Ismail, Arshad, Lowe, Michelle

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Outbreak of NDM-1- and OXA-181-Producing Klebsiella pneumoniae Bloodstream Infections in a Neonatal Unit, South Africa von Magobo, Rindidzani E, Ismail, Husna, Lowe, Michelle, Strasheim, Wilhelmina, Mogokotleng, Ruth, Perovic, Olga, Kwenda, Stanford, Ismail, Arshad, Makua, Manala, Bore, Abram, Phayane, Rose, Naidoo, Harishia, Dennis, Tanya, Ngobese, Makhosazane, Wijnant, Wim, Govender, Nelesh P

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SARS-CoV-2 genomic surveillance in wastewater as a model for monitoring evolution of endemic viruses von Yousif, Mukhlid, Rachida, Said, Taukobong, Setshaba, Ndlovu, Nkosenhle, Iwu-Jaja, Chinwe, Howard, Wayne, Moonsamy, Shelina, Mhlambi, Nompilo, Gwala, Sipho, Levy, Joshua I., Andersen, Kristian G., Scheepers, Cathrine, von Gottberg, Anne, Wolter, Nicole, Bhiman, Jinal N., Amoako, Daniel Gyamfi, Ismail, Arshad, Suchard, Melinda, McCarthy, Kerrigan

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Genome analysis of multidrug resistant Enterococcus faecium and Enterococcus faecalis circulating among hospitalized patients in uMgungundlovu District, KwaZulu-Natal, South Africa von Founou, Raspail Carrel, Founou, Luria Leslie, Allam, Mushal, Ismail, Arshad, Essack, Sabiha Yusuf

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Molecular epidemiology of carbapenemase-producing Klebsiella pneumoniae in Gauteng South Africa von Salvador-Oke, Kafilat T., Pitout, Johann D. D., Peirano, Gisele, Strydom, Kathy-Anne, Kingsburgh, Chanel, Ehlers, Marthie M., Ismail, Arshad, Takawira, Faustinos T., Kock, Marleen M.

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Multiple Novel Human Norovirus Recombinants Identified in Wastewater in Pretoria, South Africa by Next-Generation Sequencing von Mabasa, Victor Vusi, van Zyl, Walda Brenda, Ismail, Arshad, Allam, Mushal, Taylor, Maureen Beatrice, Mans, Janet

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Genomic characterization of multi drug resistant ESBL-producing Escherichia coli isolates from patients and patient environments in a teaching hospital in Ghana von Asare Yeboah, Esther Eyram, Agyepong, Nicholas, Mbanga, Joshua, Amoako, Daniel Gyamfi, Abia, Akebe Luther King, Ismail, Arshad, Owusu-Ofori, Alexander, Essack, Sabiha Yusuf

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Molecular characterisation of Acinetobacter baumannii isolates from bloodstream infections in a tertiary-level hospital in South Africa von Lowe, Michelle, Singh-Moodley, Ashika, Ismail, Husna, Thomas, Teena, Chibabhai, Vindana, Nana, Trusha, Lowman, Warren, Ismail, Arshad, Chan, Wai Yin, Perovic, Olga

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Whole Genome Sequencing of Extended-Spectrum- and AmpC- β-Lactamase-Positive Enterobacterales Isolated From Spinach Production in Gauteng Province, South Africa von Richter, Loandi, du Plessis, Erika M, Duvenage, Stacey, Allam, Mushal, Ismail, Arshad, Korsten, Lise

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Emergence and phenotypic characterization of the global SARS-CoV-2 C.1.2 lineage von Scheepers, Cathrine, Everatt, Josie, Amoako, Daniel G., Tegally, Houriiyah, Wibmer, Constantinos Kurt, Mnguni, Anele, Ismail, Arshad, Mahlangu, Boitshoko, Lambson, Bronwen E., Martin, Darren P., Wilkinson, Eduan, San, James Emmanuel, Giandhari, Jennifer, Manamela, Nelia, Ntuli, Noxolo, Kgagudi, Prudence, Cele, Sandile, Richardson, Simone I., Pillay, Sureshnee, Mohale, Thabo, Ramphal, Upasana, Naidoo, Yeshnee, Khumalo, Zamantungwa T., Kwatra, Gaurav, Gray, Glenda, Bekker, Linda-Gail, Madhi, Shabir A., Baillie, Vicky, Van Voorhis, Wesley C., Treurnicht, Florette K., Venter, Marietjie, Mlisana, Koleka, Wolter, Nicole, Sigal, Alex, Williamson, Carolyn, Hsiao, Nei-yuan, Msomi, Nokukhanya, Maponga, Tongai, Preiser, Wolfgang, Makatini, Zinhle, Lessells, Richard, Moore, Penny L., de Oliveira, Tulio, von Gottberg, Anne, Bhiman, Jinal N.

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The dynamic gut microbiota of zoophilic members of the Anopheles gambiae complex (Diptera: Culicidae) von Singh, Ashmika, Allam, Mushal, Kwenda, Stanford, Khumalo, Zamantungwa T. H., Ismail, Arshad, Oliver, Shüné V.

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An outbreak of cutaneous abscesses caused by Panton-Valentine leukocidin-producing methicillin-susceptible Staphylococcus aureus among gold mine workers, South Africa, November 201... von Ismail, Husna, Govender, Nelesh P, Singh-Moodley, Ashika, van Schalkwyk, Erika, Shuping, Liliwe, Moema, Itumeleng, Feller, Gal, Mogokotleng, Ruth, Strasheim, Wilhelmina, Lowe, Michelle, Mpembe, Ruth, Naicker, Serisha, Maphanga, Tsidiso G, De Abreu, Cecilia, Ismail, Farzana, Ismail, Nazir, Allam, Mushal, Ismail, Arshad, Singh, Tanusha, Matuka, Onnicah, Duba, Thabang, Perovic, Olga

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Genome Sequencing of Extended-Spectrum β-Lactamase (ESBL)-Producing Klebsiella pneumoniae Isolated from Pigs and Abattoir Workers in Cameroon von Founou, Luria L, Founou, Raspail C, Allam, Mushal, Ismail, Arshad, Djoko, Cyrille F, Essack, Sabiha Y

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