Progressive Cactus is a multiple-genome aligner for the thousand-genome era von Armstrong, Joel, Hickey, Glenn, Diekhans, Mark, Fiddes, Ian T., Novak, Adam M., Deran, Alden, Fang, Qi, Xie, Duo, Feng, Shaohong, Stiller, Josefin, Genereux, Diane, Johnson, Jeremy, Marinescu, Voichita Dana, Alföldi, Jessica, Harris, Robert S., Lindblad-Toh, Kerstin, Haussler, David, Karlsson, Elinor, Jarvis, Erich D., Zhang, Guojie, Paten, Benedict

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Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes von Shafin, Kishwar, Pesout, Trevor, Lorig-Roach, Ryan, Haukness, Marina, Olsen, Hugh E., Bosworth, Colleen, Armstrong, Joel, Tigyi, Kristof, Maurer, Nicholas, Koren, Sergey, Sedlazeck, Fritz J., Marschall, Tobias, Mayes, Simon, Costa, Vania, Zook, Justin M., Liu, Kelvin J., Kilburn, Duncan, Sorensen, Melanie, Munson, Katy M., Vollger, Mitchell R., Monlong, Jean, Garrison, Erik, Eichler, Evan E., Salama, Sofie, Haussler, David, Green, Richard E., Akeson, Mark, Phillippy, Adam, Miga, Karen H., Carnevali, Paolo, Jain, Miten, Paten, Benedict

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The UCSC Genome Browser database: 2018 update von Casper, Jonathan, Zweig, Ann S, Villarreal, Chris, Tyner, Cath, Speir, Matthew L, Rosenbloom, Kate R, Raney, Brian J, Lee, Christopher M, Lee, Brian T, Karolchik, Donna, Hinrichs, Angie S, Haeussler, Maximilian, Guruvadoo, Luvina, Navarro Gonzalez, Jairo, Gibson, David, Fiddes, Ian T, Eisenhart, Christopher, Diekhans, Mark, Clawson, Hiram, Barber, Galt P, Armstrong, Joel, Haussler, David, Kuhn, Robert M, Kent, W James

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Long-read sequence assembly of the gorilla genome von Gordon, David, Huddleston, John, Chaisson, Mark J. P., Hill, Christopher M., Kronenberg, Zev N., Munson, Katherine M., Malig, Maika, Raja, Archana, Fiddes, Ian, Hillier, LaDeana W., Dunn, Christopher, Baker, Carl, Armstrong, Joel, Diekhans, Mark, Paten, Benedict, Shendure, Jay, Wilson, Richard K., Haussler, David, Chin, Chen-Shan, Eichler, Evan E.

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Comparative Annotation Toolkit (CAT)-simultaneous clade and personal genome annotation von Fiddes, Ian T, Armstrong, Joel, Diekhans, Mark, Nachtweide, Stefanie, Kronenberg, Zev N, Underwood, Jason G, Gordon, David, Earl, Dent, Keane, Thomas, Eichler, Evan E, Haussler, David, Stanke, Mario, Paten, Benedict

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Whole-Genome Alignment and Comparative Annotation von Armstrong, Joel, Fiddes, Ian T, Diekhans, Mark, Paten, Benedict

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Evaluating recovery potential of the northern white rhinoceros from cryopreserved somatic cells von Tunstall, Tate, Kock, Richard, Vahala, Jiri, Diekhans, Mark, Fiddes, Ian, Armstrong, Joel, Paten, Benedict, Ryder, Oliver A, Steiner, Cynthia C

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Tolerance of Honey Bees to Varroa Mite in the Absence of Deformed Wing Virus von Roberts, John M. K., Simbiken, Nelson, Dale, Chris, Armstrong, Joel, Anderson, Denis L.

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Predicting transfer RNA gene activity from sequence and genome context von Thornlow, Bryan P., Armstrong, Joel, Holmes, Andrew D., Howard, Jonathan M., Corbett-Detig, Russell B., Lowe, Todd M.

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On the validity of the CNI model of moral decision-making: Reply to Baron and Goodwin (2020) von Gawronski, Bertram, Conway, Paul, Huetter, Mandy, Luke, Dillon M., Armstrong, Joel, Friesdorf, Rebecca

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GenArk: towards a million UCSC genome browsers von Clawson, Hiram, Lee, Brian T, Raney, Brian J, Barber, Galt P, Casper, Jonathan, Diekhans, Mark, Fischer, Clay, Gonzalez, Jairo Navarro, Hinrichs, Angie S, Lee, Christopher M, Nassar, Luis R, Perez, Gerardo, Wick, Brittney, Schmelter, Daniel, Speir, Matthew L, Armstrong, Joel, Zweig, Ann S, Kuhn, Robert M, Kirilenko, Bogdan M, Hiller, Michael, Haussler, David, Kent, W James, Haeussler, Maximilian

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Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling von Rice, Edward S, Kohno, Satomi, John, John St, Pham, Son, Howard, Jonathan, Lareau, Liana F, O'Connell, Brendan L, Hickey, Glenn, Armstrong, Joel, Deran, Alden, Fiddes, Ian, Platt, 2nd, Roy N, Gresham, Cathy, McCarthy, Fiona, Kern, Colin, Haan, David, Phan, Tan, Schmidt, Carl, Sanford, Jeremy R, Ray, David A, Paten, Benedict, Guillette, Jr, Louis J, Green, Richard E

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The Genome of C57BL/6J "Eve", the Mother of the Laboratory Mouse Genome Reference Strain von Sarsani, Vishal Kumar, Raghupathy, Narayanan, Fiddes, Ian T, Armstrong, Joel, Thibaud-Nissen, Francoise, Zinder, Oraya, Bolisetty, Mohan, Howe, Kerstin, Hinerfeld, Doug, Ruan, Xiaoan, Rowe, Lucy, Barter, Mary, Ananda, Guruprasad, Paten, Benedict, Weinstock, George M, Churchill, Gary A, Wiles, Michael V, Schneider, Valerie A, Srivastava, Anuj, Reinholdt, Laura G

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Comparative assembly hubs: web-accessible browsers for comparative genomics von Nguyen, Ngan, Hickey, Glenn, Raney, Brian J, Armstrong, Joel, Clawson, Hiram, Zweig, Ann, Karolchik, Donna, Kent, William James, Haussler, David, Paten, Benedict

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Mitochondrial Genome Sequence and Expression Profiling for the Legume Pod Borer Maruca vitrata (Lepidoptera: Crambidae) von Margam, Venu M, Coates, Brad S, Hellmich, Richard L, Agunbiade, Tolulope, Seufferheld, Manfredo J, Sun, Weilin, Ba, Malick N, Sanon, Antoine, Binso-Dabire, Clementine L, Baoua, Ibrahim, Ishiyaku, Mohammad F, Covas, Fernando G, Srinivasan, Ramasamy, Armstrong, Joel, Murdock, Larry L, Pittendrigh, Barry R

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Consequences, Norms, and Generalized Inaction in Moral Dilemmas: The CNI Model of Moral Decision-Making von Gawronski, Bertram, Armstrong, Joel, Conway, Paul, Friesdorf, Rebecca, Hütter, Mandy

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Transcriptome sequencing, and rapid development and application of SNP markers for the legume pod borer Maruca vitrata (Lepidoptera: Crambidae) von Margam, Venu M, Coates, Brad S, Bayles, Darrell O, Hellmich, Richard L, Agunbiade, Tolulope, Seufferheld, Manfredo J, Sun, Weilin, Kroemer, Jeremy A, Ba, Malick N, Binso-Dabire, Clementine L, Baoua, Ibrahim, Ishiyaku, Mohammad F, Covas, Fernando G, Srinivasan, Ramasamy, Armstrong, Joel, Murdock, Larry L, Pittendrigh, Barry R

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Clarifying Gender Differences in Moral Dilemma Judgments: The Complementary Roles of Harm Aversion and Action Aversion von Armstrong, Joel, Friesdorf, Rebecca, Conway, Paul

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Toil enables reproducible, open source, big biomedical data analyses von Vivian, John, Rao, Arjun Arkal, Nothaft, Frank Austin, Ketchum, Christopher, Armstrong, Joel, Novak, Adam, Pfeil, Jacob, Narkizian, Jake, Deran, Alden D, Musselman-Brown, Audrey, Schmidt, Hannes, Amstutz, Peter, Craft, Brian, Goldman, Mary, Rosenbloom, Kate, Cline, Melissa, O'Connor, Brian, Hanna, Megan, Birger, Chet, Kent, W James, Patterson, David A, Joseph, Anthony D, Zhu, Jingchun, Zaranek, Sasha, Getz, Gad, Haussler, David, Paten, Benedict

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Expanded encyclopaedias of DNA elements in the human and mouse genomes von Moore, Jill E., Purcaro, Michael J., Pratt, Henry E., Epstein, Charles B., Shoresh, Noam, Adrian, Jessika, Kawli, Trupti, Davis, Carrie A., Dobin, Alexander, Kaul, Rajinder, Halow, Jessica, Van Nostrand, Eric L., Freese, Peter, Gorkin, David U., Shen, Yin, He, Yupeng, Mackiewicz, Mark, Pauli-Behn, Florencia, Williams, Brian A., Mortazavi, Ali, Keller, Cheryl A., Zhang, Xiao-Ou, Elhajjajy, Shaimae I., Huey, Jack, Dickel, Diane E., Snetkova, Valentina, Wei, Xintao, Wang, Xiaofeng, Rivera-Mulia, Juan Carlos, Rozowsky, Joel, Zhang, Jing, Chhetri, Surya B., Zhang, Jialing, Victorsen, Alec, White, Kevin P., Visel, Axel, Yeo, Gene W., Burge, Christopher B., Lécuyer, Eric, Gilbert, David M., Dekker, Job, Rinn, John, Mendenhall, Eric M., Ecker, Joseph R., Kellis, Manolis, Klein, Robert J., Noble, William S., Kundaje, Anshul, Guigó, Roderic, Farnham, Peggy J., Cherry, J. Michael, Myers, Richard M., Ren, Bing, Graveley, Brenton R., Gerstein, Mark B., Pennacchio, Len A., Snyder, Michael P., Bernstein, Bradley E., Wold, Barbara, Hardison, Ross C., Gingeras, Thomas R., Stamatoyannopoulos, John A., Weng, Zhiping

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