Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors von Campbell, Lahcen I, Nwezeobi, Joachim, van Brunschot, Sharon L, Kaweesi, Tadeo, Seal, Susan E, Swamy, Rekha A R, Namuddu, Annet, Maslen, Gareth L, Mugerwa, Habibu, Armean, Irina M, Haggerty, Leanne, Martin, Fergal J, Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E, Muhindira, Paul Visendi, Kersey, Paul J, Maruthi, M N, Omongo, Christopher A, Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus, Colvin, John

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The genome of the biting midge Culicoides sonorensis and gene expression analyses of vector competence for bluetongue virus von Morales-Hojas, Ramiro, Hinsley, Malcolm, Armean, Irina M, Silk, Rhiannon, Harrup, Lara E, Gonzalez-Uriarte, Asier, Veronesi, Eva, Campbell, Lahcen, Nayduch, Dana, Saski, Christopher, Tabachnick, Walter J, Kersey, Paul, Carpenter, Simon, Fife, Mark

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In Vivo Analysis of Proteomes and Interactomes Using Parallel Affinity Capture (iPAC) Coupled to Mass Spectrometry von Rees, Johanna S., Lowe, Nick, Armean, Irina M., Roote, John, Johnson, Glynnis, Drummond, Emma, Spriggs, Helen, Ryder, Edward, Russell, Steven, Johnston, Daniel St, Lilley, Kathryn S.

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The mutational constraint spectrum quantified from variation in 141,456 humans von Karczewski, Konrad J., Francioli, Laurent C., Tiao, Grace, Cummings, Beryl B., Alföldi, Jessica, Wang, Qingbo, Collins, Ryan L., Laricchia, Kristen M., Ganna, Andrea, Birnbaum, Daniel P., Gauthier, Laura D., Brand, Harrison, Solomonson, Matthew, Watts, Nicholas A., Rhodes, Daniel, Singer-Berk, Moriel, England, Eleina M., Seaby, Eleanor G., Kosmicki, Jack A., Walters, Raymond K., Tashman, Katherine, Farjoun, Yossi, Banks, Eric, Poterba, Timothy, Wang, Arcturus, Seed, Cotton, Whiffin, Nicola, Chong, Jessica X., Samocha, Kaitlin E., Pierce-Hoffman, Emma, Zappala, Zachary, O’Donnell-Luria, Anne H., Minikel, Eric Vallabh, Weisburd, Ben, Lek, Monkol, Ware, James S., Vittal, Christopher, Armean, Irina M., Bergelson, Louis, Cibulskis, Kristian, Connolly, Kristen M., Covarrubias, Miguel, Donnelly, Stacey, Ferriera, Steven, Gabriel, Stacey, Gentry, Jeff, Gupta, Namrata, Jeandet, Thibault, Kaplan, Diane, Llanwarne, Christopher, Munshi, Ruchi, Novod, Sam, Petrillo, Nikelle, Roazen, David, Ruano-Rubio, Valentin, Saltzman, Andrea, Schleicher, Molly, Soto, Jose, Tibbetts, Kathleen, Tolonen, Charlotte, Wade, Gordon, Talkowski, Michael E., Neale, Benjamin M., Daly, Mark J., MacArthur, Daniel G.

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Ensembl 2020 von Yates, Andrew D, Achuthan, Premanand, Akanni, Wasiu, Allen, James, Allen, Jamie, Alvarez-Jarreta, Jorge, Amode, M Ridwan, Armean, Irina M, Azov, Andrey G, Bennett, Ruth, Bhai, Jyothish, Billis, Konstantinos, Boddu, Sanjay, Marugán, José Carlos, Cummins, Carla, Davidson, Claire, Dodiya, Kamalkumar, Fatima, Reham, Gall, Astrid, Giron, Carlos Garcia, Gil, Laurent, Grego, Tiago, Haggerty, Leanne, Haskell, Erin, Hourlier, Thibaut, Izuogu, Osagie G, Janacek, Sophie H, Juettemann, Thomas, Kay, Mike, Lavidas, Ilias, Le, Tuan, Lemos, Diana, Martinez, Jose Gonzalez, Maurel, Thomas, McDowall, Mark, McMahon, Aoife, Mohanan, Shamika, Moore, Benjamin, Nuhn, Michael, Oheh, Denye N, Parker, Anne, Parton, Andrew, Patricio, Mateus, Sakthivel, Manoj Pandian, Abdul Salam, Ahamed Imran, Schmitt, Bianca M, Schuilenburg, Helen, Sheppard, Dan, Sycheva, Mira, Szuba, Marek, Taylor, Kieron, Thormann, Anja, Threadgold, Glen, Vullo, Alessandro, Walts, Brandon, Winterbottom, Andrea, Zadissa, Amonida, Chakiachvili, Marc, Flint, Bethany, Frankish, Adam, Hunt, Sarah E, IIsley, Garth, Kostadima, Myrto, Langridge, Nick, Loveland, Jane E, Martin, Fergal J, Morales, Joannella, Mudge, Jonathan M, Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Trevanion, Stephen J, Cunningham, Fiona, Howe, Kevin L, Zerbino, Daniel R, Flicek, Paul

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Ensembl 2019 von Cunningham, Fiona, Achuthan, Premanand, Akanni, Wasiu, Allen, James, Amode, M Ridwan, Armean, Irina M, Bennett, Ruth, Bhai, Jyothish, Billis, Konstantinos, Boddu, Sanjay, Cummins, Carla, Davidson, Claire, Dodiya, Kamalkumar Jayantilal, Gall, Astrid, Girón, Carlos García, Gil, Laurent, Grego, Tiago, Haggerty, Leanne, Haskell, Erin, Hourlier, Thibaut, Izuogu, Osagie G, Janacek, Sophie H, Juettemann, Thomas, Kay, Mike, Laird, Matthew R, Lavidas, Ilias, Liu, Zhicheng, Loveland, Jane E, Marugán, José C, Maurel, Thomas, McMahon, Aoife C, Moore, Benjamin, Morales, Joannella, Mudge, Jonathan M, Nuhn, Michael, Ogeh, Denye, Parker, Anne, Parton, Andrew, Patricio, Mateus, Abdul Salam, Ahamed Imran, Schmitt, Bianca M, Schuilenburg, Helen, Sheppard, Dan, Sparrow, Helen, Stapleton, Eloise, Szuba, Marek, Taylor, Kieron, Threadgold, Glen, Thormann, Anja, Vullo, Alessandro, Walts, Brandon, Winterbottom, Andrea, Zadissa, Amonida, Chakiachvili, Marc, Frankish, Adam, Hunt, Sarah E, Kostadima, Myrto, Langridge, Nick, Martin, Fergal J, Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Staines, Daniel M, Trevanion, Stephen J, Aken, Bronwen L, Yates, Andrew D, Zerbino, Daniel R, Flicek, Paul

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Ensembl variation resources von Hunt, Sarah E, McLaren, William, Gil, Laurent, Thormann, Anja, Schuilenburg, Helen, Sheppard, Dan, Parton, Andrew, Armean, Irina M, Trevanion, Stephen J, Flicek, Paul, Cunningham, Fiona

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The value of primary transcripts to the clinical and non‐clinical genomics community: Survey results and roadmap for improvements von Morales, Joannella, McMahon, Aoife C., Loveland, Jane, Perry, Emily, Frankish, Adam, Hunt, Sarah, Armean, Irina M., Flicek, Paul, Cunningham, Fiona

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Transcript expression-aware annotation improves rare variant interpretation von Cummings, Beryl B., Karczewski, Konrad J., Kosmicki, Jack A., Seaby, Eleanor G., Watts, Nicholas A., Singer-Berk, Moriel, Mudge, Jonathan M., Karjalainen, Juha, Satterstrom, F. Kyle, O’Donnell-Luria, Anne H., Poterba, Timothy, Seed, Cotton, Solomonson, Matthew, Alföldi, Jessica, Daly, Mark J., MacArthur, Daniel G.

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Human knockouts and phenotypic analysis in a cohort with a high rate of consanguinity von Saleheen, Danish, Natarajan, Pradeep, Armean, Irina M., Zhao, Wei, Rasheed, Asif, Khetarpal, Sumeet A., Won, Hong-Hee, Karczewski, Konrad J., O’Donnell-Luria, Anne H., Samocha, Kaitlin E., Weisburd, Benjamin, Gupta, Namrata, Zaidi, Mozzam, Samuel, Maria, Imran, Atif, Abbas, Shahid, Majeed, Faisal, Ishaq, Madiha, Akhtar, Saba, Trindade, Kevin, Mucksavage, Megan, Qamar, Nadeem, Zaman, Khan Shah, Yaqoob, Zia, Saghir, Tahir, Rizvi, Syed Nadeem Hasan, Memon, Anis, Hayyat Mallick, Nadeem, Ishaq, Mohammad, Rasheed, Syed Zahed, Memon, Fazal-ur-Rehman, Mahmood, Khalid, Ahmed, Naveeduddin, Do, Ron, Krauss, Ronald M., MacArthur, Daniel G., Gabriel, Stacey, Lander, Eric S., Daly, Mark J., Frossard, Philippe, Danesh, John, Rader, Daniel J., Kathiresan, Sekar

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Annotating and prioritizing genomic variants using the Ensembl Variant Effect Predictor—A tutorial von Hunt, Sarah E., Moore, Benjamin, Amode, Ridwan M., Armean, Irina M., Lemos, Diana, Mushtaq, Aleena, Parton, Andrew, Schuilenburg, Helen, Szpak, Michał, Thormann, Anja, Perry, Emily, Trevanion, Stephen J., Flicek, Paul, Yates, Andrew D., Cunningham, Fiona

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A plugin for the Ensembl Variant Effect Predictor that uses MaxEntScan to predict variant spliceogenicity von Shamsani, Jannah, Kazakoff, Stephen H, Armean, Irina M, McLaren, Will, Parsons, Michael T, Thompson, Bryony A, O'Mara, Tracy A, Hunt, Sarah E, Waddell, Nicola, Spurdle, Amanda B

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The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research [version 1; peer review: 2 approved] von Salgado, David, Armean, Irina M, Baudis, Michael, Beltran, Sergi, Capella-Gutierrez, Salvador, Carvalho-Silva, Denise, Dominguez Del Angel, Victoria, Dopazo, Joaquin, Furlong, Laura I, Gao, Bo, Garcia, Leyla, Gerloff, Dietlind, Gut, Ivo, Gyenesei, Attila, Habermann, Nina, Hancock, John M, Hanauer, Marc, Hovig, Eivind, Johansson, Lennart F, Keane, Thomas, Korbel, Jan, Lauer, Katharina B, Laurie, Steve, Leskošek, Brane, Lloyd, David, Marques-Bonet, Tomas, Mei, Hailiang, Monostory, Katalin, Piñero, Janet, Poterlowicz, Krzysztof, Rath, Ana, Samarakoon, Pubudu, Sanz, Ferran, Saunders, Gary, Sie, Daoud, Swertz, Morris A, Tsukanov, Kirill, Valencia, Alfonso, Vidak, Marko, Yenyxe González, Cristina, Ylstra, Bauke, Béroud, Christophe

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Analysis of the expression patterns, subcellular localisations and interaction partners of Drosophila proteins using a pigP protein trap library von Lowe, Nick, Rees, Johanna S, Roote, John, Ryder, Ed, Armean, Irina M, Johnson, Glynnis, Drummond, Emma, Spriggs, Helen, Drummond, Jenny, Magbanua, Jose P, Naylor, Huw, Sanson, Bénédicte, Bastock, Rebecca, Huelsmann, Sven, Trovisco, Vitor, Landgraf, Matthias, Knowles-Barley, Seymour, Armstrong, J Douglas, White-Cooper, Helen, Hansen, Celia, Phillips, Roger G, Lilley, Kathryn S, Russell, Steven, St Johnston, Daniel

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Co-complex protein membership evaluation using Maximum Entropy on GO ontology and InterPro annotation von Armean, Irina M, Lilley, Kathryn S, Trotter, Matthew W B, Pilkington, Nicholas C V, Holden, Sean B

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Popular Computational Methods to Assess Multiprotein Complexes Derived From Label-Free Affinity Purification and Mass Spectrometry (AP-MS) Experiments von Armean, Irina M., Lilley, Kathryn S., Trotter, Matthew W.B.

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Addendum: The mutational constraint spectrum quantified from variation in 141,456 humans von Gudmundsson, Sanna, Karczewski, Konrad J., Francioli, Laurent C., Tiao, Grace, Cummings, Beryl B., Alföldi, Jessica, Wang, Qingbo, Collins, Ryan L., Laricchia, Kristen M., Ganna, Andrea, Birnbaum, Daniel P., Gauthier, Laura D., Brand, Harrison, Solomonson, Matthew, Watts, Nicholas A., Rhodes, Daniel, Singer-Berk, Moriel, England, Eleina M., Seaby, Eleanor G., Kosmicki, Jack A., Walters, Raymond K., Tashman, Katherine, Farjoun, Yossi, Banks, Eric, Poterba, Timothy, Wang, Arcturus, Seed, Cotton, Whiffin, Nicola, Chong, Jessica X., Samocha, Kaitlin E., Pierce-Hoffman, Emma, Zappala, Zachary, O’Donnell-Luria, Anne H., Minikel, Eric Vallabh, Weisburd, Ben, Lek, Monkol, Ware, James S., Vittal, Christopher, Armean, Irina M., Bergelson, Louis, Cibulskis, Kristian, Connolly, Kristen M., Covarrubias, Miguel, Donnelly, Stacey, Ferriera, Steven, Gabriel, Stacey, Gentry, Jeff, Gupta, Namrata, Jeandet, Thibault, Kaplan, Diane, Llanwarne, Christopher, Munshi, Ruchi, Novod, Sam, Petrillo, Nikelle, Roazen, David, Ruano-Rubio, Valentin, Saltzman, Andrea, Schleicher, Molly, Soto, Jose, Tibbetts, Kathleen, Tolonen, Charlotte, Wade, Gordon, Talkowski, Michael E., Neale, Benjamin M., Daly, Mark J., MacArthur, Daniel G.

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Author Correction: The mutational constraint spectrum quantified from variation in 141,456 humans von Karczewski, Konrad J., Francioli, Laurent C., Tiao, Grace, Cummings, Beryl B., Alföldi, Jessica, Wang, Qingbo, Collins, Ryan L., Laricchia, Kristen M., Ganna, Andrea, Birnbaum, Daniel P., Gauthier, Laura D., Brand, Harrison, Solomonson, Matthew, Watts, Nicholas A., Rhodes, Daniel, Singer-Berk, Moriel, England, Eleina M., Seaby, Eleanor G., Kosmicki, Jack A., Walters, Raymond K., Tashman, Katherine, Farjoun, Yossi, Banks, Eric, Poterba, Timothy, Wang, Arcturus, Seed, Cotton, Whiffin, Nicola, Chong, Jessica X., Samocha, Kaitlin E., Pierce-Hoffman, Emma, Zappala, Zachary, O’Donnell-Luria, Anne H., Minikel, Eric Vallabh, Weisburd, Ben, Lek, Monkol, Ware, James S., Vittal, Christopher, Armean, Irina M., Bergelson, Louis, Cibulskis, Kristian, Connolly, Kristen M., Covarrubias, Miguel, Donnelly, Stacey, Ferriera, Steven, Gabriel, Stacey, Gentry, Jeff, Gupta, Namrata, Jeandet, Thibault, Kaplan, Diane, Llanwarne, Christopher, Munshi, Ruchi, Novod, Sam, Petrillo, Nikelle, Roazen, David, Ruano-Rubio, Valentin, Saltzman, Andrea, Schleicher, Molly, Soto, Jose, Tibbetts, Kathleen, Tolonen, Charlotte, Wade, Gordon, Talkowski, Michael E., Neale, Benjamin M., Daly, Mark J., MacArthur, Daniel G.

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Ensembl 2021 von Howe, Kevin L, Achuthan, Premanand, Allen, James, Allen, Jamie, Alvarez-Jarreta, Jorge, Amode, M Ridwan, Armean, Irina M, Azov, Andrey G, Bennett, Ruth, Bhai, Jyothish, Billis, Konstantinos, Boddu, Sanjay, Charkhchi, Mehrnaz, Cummins, Carla, Da Rin Fioretto, Luca, Davidson, Claire, Dodiya, Kamalkumar, El Houdaigui, Bilal, Fatima, Reham, Gall, Astrid, Garcia Giron, Carlos, Grego, Tiago, Guijarro-Clarke, Cristina, Haggerty, Leanne, Hemrom, Anmol, Hourlier, Thibaut, Izuogu, Osagie G, Juettemann, Thomas, Kaikala, Vinay, Kay, Mike, Lavidas, Ilias, Le, Tuan, Lemos, Diana, Gonzalez Martinez, Jose, Marugán, José Carlos, Maurel, Thomas, McMahon, Aoife C, Mohanan, Shamika, Moore, Benjamin, Muffato, Matthieu, Oheh, Denye N, Paraschas, Dimitrios, Parker, Anne, Parton, Andrew, Prosovetskaia, Irina, Sakthivel, Manoj P, Salam, Ahamed I Abdul, Schmitt, Bianca M, Schuilenburg, Helen, Sheppard, Dan, Steed, Emily, Szpak, Michal, Szuba, Marek, Taylor, Kieron, Thormann, Anja, Threadgold, Glen, Walts, Brandon, Winterbottom, Andrea, Chakiachvili, Marc, Chaubal, Ameya, De Silva, Nishadi, Flint, Bethany, Frankish, Adam, Hunt, Sarah E, IIsley, Garth R, Langridge, Nick, Loveland, Jane E, Martin, Fergal J, Mudge, Jonathan M, Morales, Joanella, Perry, Emily, Ruffier, Magali, Tate, John, Thybert, David, Trevanion, Stephen J, Cunningham, Fiona, Yates, Andrew D, Zerbino, Daniel R, Flicek, Paul

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Ensembl 2022 von Cunningham, Fiona, Allen, James E, Allen, Jamie, Alvarez-Jarreta, Jorge, Amode, M Ridwan, Armean, Irina M, Austine-Orimoloye, Olanrewaju, Azov, Andrey G, Barnes, If, Bennett, Ruth, Berry, Andrew, Bhai, Jyothish, Bignell, Alexandra, Billis, Konstantinos, Boddu, Sanjay, Brooks, Lucy, Charkhchi, Mehrnaz, Cummins, Carla, Da Rin Fioretto, Luca, Davidson, Claire, Dodiya, Kamalkumar, Donaldson, Sarah, El Houdaigui, Bilal, El Naboulsi, Tamara, Fatima, Reham, Giron, Carlos Garcia, Genez, Thiago, Martinez, Jose Gonzalez, Guijarro-Clarke, Cristina, Gymer, Arthur, Hardy, Matthew, Hollis, Zoe, Hourlier, Thibaut, Hunt, Toby, Juettemann, Thomas, Kaikala, Vinay, Kay, Mike, Lavidas, Ilias, Le, Tuan, Lemos, Diana, Marugán, José Carlos, Mohanan, Shamika, Mushtaq, Aleena, Naven, Marc, Ogeh, Denye N, Parker, Anne, Parton, Andrew, Perry, Malcolm, Piližota, Ivana, Prosovetskaia, Irina, Sakthivel, Manoj Pandian, Salam, Ahamed Imran Abdul, Schmitt, Bianca M, Schuilenburg, Helen, Sheppard, Dan, Pérez-Silva, José G, Stark, William, Steed, Emily, Sutinen, Kyösti, Sukumaran, Ranjit, Sumathipala, Dulika, Suner, Marie-Marthe, Szpak, Michal, Thormann, Anja, Tricomi, Francesca Floriana, Urbina-Gómez, David, Veidenberg, Andres, Walsh, Thomas A, Walts, Brandon, Willhoft, Natalie, Winterbottom, Andrea, Wass, Elizabeth, Chakiachvili, Marc, Flint, Bethany, Frankish, Adam, Giorgetti, Stefano, Haggerty, Leanne, Hunt, Sarah E, IIsley, Garth R, Loveland, Jane E, Martin, Fergal J, Moore, Benjamin, Mudge, Jonathan M, Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Tate, John, Thybert, David, Trevanion, Stephen J, Dyer, Sarah, Harrison, Peter W, Howe, Kevin L, Yates, Andrew D, Zerbino, Daniel R, Flicek, Paul

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