Efficient ancestry and mutation simulation with msprime 1.0 von Baumdicker, Franz, Bisschop, Gertjan, Goldstein, Daniel, Gower, Graham, Ragsdale, Aaron P, Tsambos, Georgia, Zhu, Sha, Eldon, Bjarki, Ellerman, E Castedo, Galloway, Jared G, Gladstein, Ariella L, Gorjanc, Gregor, Guo, Bing, Jeffery, Ben, Kretzschumar, Warren W, Lohse, Konrad, Matschiner, Michael, Nelson, Dominic, Pope, Nathaniel S, Quinto-Cortés, Consuelo D, Rodrigues, Murillo F, Saunack, Kumar, Sellinger, Thibaut, Thornton, Kevin, van Kemenade, Hugo, Wohns, Anthony W, Wong, Yan, Gravel, Simon, Kern, Andrew D, Koskela, Jere, Ralph, Peter L, Kelleher, Jerome

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Substructured Population Growth in the Ashkenazi Jews Inferred with Approximate Bayesian Computation von Gladstein, Ariella L, Hammer, Michael F

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A community-maintained standard library of population genetic models von Adrion, Jeffrey R, Cole, Christopher B, Dukler, Noah, Galloway, Jared G, Gladstein, Ariella L, Gower, Graham, Kyriazis, Christopher C, Ragsdale, Aaron P, Tsambos, Georgia, Baumdicker, Franz, Carlson, Jedidiah, Cartwright, Reed A, Durvasula, Arun, Gronau, Ilan, Kim, Bernard Y, McKenzie, Patrick, Messer, Philipp W, Noskova, Ekaterina, Ortega-Del Vecchyo, Diego, Racimo, Fernando, Struck, Travis J, Gravel, Simon, Gutenkunst, Ryan N, Lohmueller, Kirk E, Ralph, Peter L, Schrider, Daniel R, Siepel, Adam, Kelleher, Jerome, Kern, Andrew D

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Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations von Lauterbur, M Elise, Cavassim, Maria Izabel A, Gladstein, Ariella L, Gower, Graham, Pope, Nathaniel S, Tsambos, Georgia, Adrion, Jeffrey, Belsare, Saurabh, Biddanda, Arjun, Caudill, Victoria, Cury, Jean, Echevarria, Ignacio, Haller, Benjamin C, Hasan, Ahmed R, Huang, Xin, Iasi, Leonardo Nicola Martin, Noskova, Ekaterina, Obsteter, Jana, Pavinato, Vitor Antonio Correa, Pearson, Alice, Peede, David, Perez, Manolo F, Rodrigues, Murillo F, Smith, Chris C R, Spence, Jeffrey P, Teterina, Anastasia, Tittes, Silas, Unneberg, Per, Vazquez, Juan Manuel, Waples, Ryan K, Wohns, Anthony Wilder, Wong, Yan, Baumdicker, Franz, Cartwright, Reed A, Gorjanc, Gregor, Gutenkunst, Ryan N, Kelleher, Jerome, Kern, Andrew D, Ragsdale, Aaron P, Ralph, Peter L, Schrider, Daniel R, Gronau, Ilan

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Jupyter notebook-based tools for building structured datasets from the Sequence Read Archive [version 2; peer review: 2 approved] von Bernstein, Matthew N, Gladstein, Ariella, Latt, Khun Zaw, Clough, Emily, Busby, Ben, Dillman, Allissa

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SimPrily: A Python framework to simplify high-throughput genomic simulations von Gladstein, Ariella L., Quinto-Cortés, Consuelo D., Pistorius, Julian L., Christy, David, Gantner, Logan, Joyce, Blake L.

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Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations von Lauterbur, M Elise, Cavassim, Maria Izabel A, Gladstein, Ariella L, Gower, Graham, Pope, Nathaniel S, Tsambos, Georgia, Adrion, Jeffrey, Belsare, Saurabh, Biddanda, Arjun, Caudill, Victoria, Cury, Jean, Echevarria, Ignacio, Haller, Benjamin C, Hasan, Ahmed R, Huang, Xin, Iasi, Leonardo Nicola Martin, Noskova, Ekaterina, Obsteter, Jana, Pavinato, Vitor Antonio Correa, Pearson, Alice, Peede, David, Perez, Manolo F, Rodrigues, Murillo F, Smith, Chris CR, Spence, Jeffrey P, Teterina, Anastasia, Tittes, Silas, Unneberg, Per, Vazquez, Juan Manuel, Waples, Ryan K, Wohns, Anthony Wilder, Wong, Yan, Baumdicker, Franz, Cartwright, Reed A, Gorjanc, Gregor, Gutenkunst, Ryan N, Kelleher, Jerome, Kern, Andrew D, Ragsdale, Aaron P, Ralph, Peter L, Schrider, Daniel R, Gronau, Ilan

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Jupyter notebook-based tools for building structured datasets from the Sequence Read Archive [version 1; peer review: 2 approved with reservations] von Bernstein, Matthew N, Gladstein, Ariella, Latt, Khun Zaw, Clough, Emily, Busby, Ben, Dillman, Allissa

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No Evidence from Genome-Wide Data of a Khazar Origin for the Ashkenazi Jews von Behar, Doron M., Metspalu, Mait, Baran, Yael, Kopelman, Naama M., Yunusbayev, Bayazit, Gladstein, Ariella, Tzur, Shay, Sahakyan, Hovhannes, Bahmanimehr, Ardeshir, Yepiskoposyan, Levon, Tambets, Kristiina, Khusnutdinova, Elza K., Kushniarevich, Alena, Balanovsky, Oleg, Balanovsky, Elena, Kovacevic, Lejla, Marjanovic, Damir, Mihailov, Evelin, Kouvatsi, Anastasia, Triantaphyllidis, Costas, King, Roy J., Semino, Ornella, Torroni, Antonio, Hammer, Michael F., Metspalu, Ene, Skorecki, Karl, Rosset, Saharon, Halperin, Eran, Villems, Richard, Rosenberg, Noah A.

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ABC_real_data von Gladstein, Ariella

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Ashkenazi SNP array data hg18 von Gladstein, Ariella

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Combined Jewish, European, Middle Eastern SNP array data von Gladstein, Ariella

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Chromosome 1 simulated data von Gladstein, Ariella

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Original Ashkenazi SNP array data von Gladstein, Ariella

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Chr2-chr5 updated priors von Gladstein, Ariella

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Genome simulated data von Gladstein, Ariella

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No Evidence from Genome-wide Data of a Khazar Origin fo the Ashkenazi Jews von Doron M. Behar, Mait Metspalu, Yael Baran, Naama M. Kopelman, Bayazit Yunusbayev, Ariella Gladstein, Shay Tzur, Hovhannes Sahakyan, Ardeshir Bahmanimehr, Levon Yepiskoposyan, Kristiina Tambets, Elza K. Khusnutdinova, Alena Kushniarevich, Oleg Balanovsky, Elena Balanovsky, Lejla Kovacevic, Damir Marjanovic, Evelin Mohailov, Anastasia Kouvatsi, Costas Triantaphyllidis, Roy J. King, Ornella Semino, Antonio Torroni, Michael F. Hammer, Ene Metspalu, Karl Skorecki, Saharon Rosset, Eran Halperin, Richard Villems, Noah A. Rosenberg

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No Evidence from Genome-wide Data of a Khazar Origin for the Ashkenazi Jews von Behar, Doron M., Metspalu, Mait, Baran, Yael, Kopelman, Naama M., Yunusbayen, Bayazit, Gladstein, Ariella, Tzur, Shay, Sahakyan, Hovhannes, Bahmanimehr, Ardeshir, Yepiskoposyan, Levon, Tambets, Kristiina, Khusnutdinova, Elza K., Kushniarevich, Alena, Balanovsky, Oleg, Balanovsky, Elena, Kovacevic, Lejla, Marjanovic, Damir, Mihailov, Evelin, Kouvatsi, Anastasia, Triantaphyllidis, Costas, King, Roy J., Semino, Ornella, Torroni, Antonio, Hammer, Michael F., Metspalu, Ene, Skorecki, Karl, Rosset, Saharon, Halperin, Eran, Villems, Richard, Rosenberg, Noah A.

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Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations von Lauterbur, M Elise, Cavassim, Maria Izabel A, Gladstein, Ariella L, Gower, Graham, Pope, Nathaniel S, Tsambos, Georgia, Adrion, Jeffrey, Belsare, Saurabh, Biddanda, Arjun, Caudill, Victoria, Cury, Jean, Echevarria, Ignacio, Haller, Benjamin C, Hasan, Ahmed R, Huang, Xin, Iasi, Leonardo Nicola Martin, Noskova, Ekaterina, Obsteter, Jana, Pavinato, Vitor Antonio Correa, Pearson, Alice, Peede, David, Perez, Manolo F, Rodrigues, Murillo F, Smith, Chris CR, Spence, Jeffrey P, Teterina, Anastasia, Tittes, Silas, Unneberg, Per, Vazquez, Juan Manuel, Waples, Ryan K, Wohns, Anthony Wilder, Wong, Yan, Baumdicker, Franz, Cartwright, Reed A, Gorjanc, Gregor, Gutenkunst, Ryan N, Kelleher, Jerome, Kern, Andrew D, Ragsdale, Aaron P, Ralph, Peter L, Schrider, Daniel R, Gronau, Ilan

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Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations von Lauterbur, M. Elise, Cavassim, Maria Izabel A, Gladstein, Ariella L, Gower, Graham, Pope, Nathaniel S, Tsambos, Georgia, Adrion, Jeffrey, Belsare, Saurabh, Biddanda, Arjun, Caudill, Victoria, Cury, Jean, Echevarria, Ignacio, Haller, Benjamin C, Hasan, Ahmed R, Huang, Xin, Iasi, Leonardo Nicola Martin, Noskova, Ekaterina, Obsteter, Jana, Pavinato, Vitor Antonio Correa, Pearson, Alice, Peede, David, Perez, Manolo F, Rodrigues, Murillo F, Smith, Chris C. R, Spence, Jeffrey P, Teterina, Anastasia, Tittes, Silas, Unneberg, Per, Vazquez, Juan Manuel, Waples, Ryan K, Wohns, Anthony Wilder, Wong, Yan, Baumdicker, Franz, Cartwright, Reed A, Gorjanc, Gregor, Gutenkunst, Ryan N, Kelleher, Jerome, Kern, Andrew D, Ragsdale, Aaron P, Ralph, Peter L, Schrider, Daniel R, Gronau, Ilan

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