Advancing discovery in hearing research via biologist-friendly access to multi-omic data von Hertzano, Ronna, Mahurkar, Anup

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Strains, functions and dynamics in the expanded Human Microbiome Project von Lloyd-Price, Jason, Mahurkar, Anup, Rahnavard, Gholamali, Crabtree, Jonathan, Orvis, Joshua, Hall, A. Brantley, Brady, Arthur, Creasy, Heather H., McCracken, Carrie, Giglio, Michelle G., McDonald, Daniel, Franzosa, Eric A., Knight, Rob, White, Owen, Huttenhower, Curtis

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Brain feminization requires active repression of masculinization via DNA methylation von Nugent, Bridget M, Wright, Christopher L, Shetty, Amol C, Hodes, Georgia E, Lenz, Kathryn M, Mahurkar, Anup, Russo, Scott J, Devine, Scott E, McCarthy, Margaret M

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CD34 defines melanocyte stem cell subpopulations with distinct regenerative properties von Joshi, Sandeep S, Tandukar, Bishal, Pan, Li, Huang, Jennifer M, Livak, Ferenc, Smith, Barbara J, Hodges, Theresa, Mahurkar, Anup A, Hornyak, Thomas J

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gEAR: Gene Expression Analysis Resource portal for community-driven, multi-omic data exploration von Orvis, Joshua, Gottfried, Brian, Kancherla, Jayaram, Adkins, Ricky S., Song, Yang, Dror, Amiel A., Olley, Dustin, Rose, Kevin, Chrysostomou, Elena, Kelly, Michael C., Milon, Beatrice, Matern, Maggie S., Azaiez, Hela, Herb, Brian, Colantuoni, Carlo, Carter, Robert L., Ament, Seth A., Kelley, Matthew W., White, Owen, Bravo, Hector Corrada, Mahurkar, Anup, Hertzano, Ronna

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The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain von Ament, Seth A, Adkins, Ricky S, Carter, Robert, Chrysostomou, Elena, Colantuoni, Carlo, Crabtree, Jonathan, Creasy, Heather H, Degatano, Kylee, Felix, Victor, Gandt, Peter, Garden, Gwenn A, Giglio, Michelle, Herb, Brian R, Khajouei, Farzaneh, Kiernan, Elizabeth, McCracken, Carrie, McDaniel, Kennedy, Nadendla, Suvarna, Nickel, Lance, Olley, Dustin, Orvis, Joshua, Receveur, Joseph P, Schor, Mike, Sonthalia, Shreyash, Tickle, Timothy L, Way, Jessica, Hertzano, Ronna, Mahurkar, Anup A, White, Owen R

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Mutagenesis of human genomes by endogenous mobile elements on a population scale von Chuang, Nelson T., Gardner, Eugene J., Terry, Diane M., Crabtree, Jonathan, Mahurkar, Anup A., Rivell, Guillermo L., Hong, Charles C., Perry, James A., Devine, Scott E.

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Best practices on the differential expression analysis of multi-species RNA-seq von Chung, Matthew, Bruno, Vincent M., Rasko, David A., Cuomo, Christina A., Munoz, Jose F., Livny, Jonathan, Shetty, Amol C., Mahurkar, Anup, Dunning Hotopp, Julie C.

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Natural genetic variation caused by small insertions and deletions in the human genome von Mills, Ryan E, Pittard, W Stephen, Mullaney, Julienne M, Farooq, Umar, Creasy, Todd H, Mahurkar, Anup A, Kemeza, David M, Strassler, Daniel S, Ponting, Chris P, Webber, Caleb, Devine, Scott E

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Reprogramming Chromosome Ends by Functional Histone Acetylation von Meltzer, W Alex, Gupta, Aditi, Lin, Phyo Nay, Brown, Robert A, Benyamien-Roufaeil, Daniel S, Khatri, Raju, Mahurkar, Anup A, Song, Yang, Taylor, Rodney J, Zalzman, Michal

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A comparative analysis of library prep approaches for sequencing low input translatome samples von Song, Yang, Milon, Beatrice, Ott, Sandra, Zhao, Xuechu, Sadzewicz, Lisa, Shetty, Amol, Boger, Erich T, Tallon, Luke J, Morell, Robert J, Mahurkar, Anup, Hertzano, Ronna

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Microtubules underlie dysfunction in duchenne muscular dystrophy von Khairallah, Ramzi J, Shi, Guoli, Sbrana, Francesca, Prosser, Benjamin L, Borroto, Carlos, Mazaitis, Mark J, Hoffman, Eric P, Mahurkar, Anup, Sachs, Fredrick, Sun, Yezhou, Chen, Yi-Wen, Raiteri, Roberto, Lederer, W Jonathan, Dorsey, Susan G, Ward, Christopher W

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Venetoclax and pegcrisantaspase for complex karyotype acute myeloid leukemia von Emadi, Ashkan, Kapadia, Bandish, Bollino, Dominique, Bhandary, Binny, Baer, Maria R., Niyongere, Sandrine, Strovel, Erin T., Kaizer, Hannah, Chang, Elizabeth, Choi, Eun Yong, Ma, Xinrong, Tighe, Kayla M., Carter-Cooper, Brandon, Moses, Blake S., Civin, Curt I., Mahurkar, Anup, Shetty, Amol C., Gartenhaus, Ronald B., Kamangar, Farin, Lapidus, Rena G.

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Peripheral blood transcriptomic profiling of molecular mechanisms commonly regulated by binge drinking and placebo effects von Shetty, Amol Carl, Sivinski, John, Cornell, Jessica, McCracken, Carrie, Sadzewicz, Lisa, Mahurkar, Anup, Wang, Xing-Qun, Colloca, Luana, Lin, Weihong, Pilli, Nageswara, Kane, Maureen A., Seneviratne, Chamindi

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Functional dynamics of the gut microbiome in elderly people during probiotic consumption von Eloe-Fadrosh, Emiley A, Brady, Arthur, Crabtree, Jonathan, Drabek, Elliott F, Ma, Bing, Mahurkar, Anup, Ravel, Jacques, Haverkamp, Miriam, Fiorino, Anne-Maria, Botelho, Christine, Andreyeva, Irina, Hibberd, Patricia L, Fraser, Claire M

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MAMS: matrix and analysis metadata standards to facilitate harmonization and reproducibility of single-cell data von Sarfraz, Irzam, Wang, Yichen, Shastry, Amulya, Teh, Wei Kheng, Sokolov, Artem, Herb, Brian R, Creasy, Heather H, Virshup, Isaac, Dries, Ruben, Degatano, Kylee, Mahurkar, Anup, Schnell, Daniel J, Madrigal, Pedro, Hilton, Jason, Gehlenborg, Nils, Tickle, Timothy, Campbell, Joshua D

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The miRNA Expression Profile of Experimental Autoimmune Encephalomyelitis Reveals Novel Potential Disease Biomarkers von Venkatesha, Shivaprasad H, Dudics, Steven, Song, Yang, Mahurkar, Anup, Moudgil, Kamal D

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Cardiomyocyte-specific perilipin 5 overexpression leads to myocardial steatosis and modest cardiac dysfunction von Wang, Hong, Sreenivasan, Urmila, Gong, Da-Wei, O'Connell, Kelly A, Dabkowski, Erinne R, Hecker, Peter A, Ionica, Nicoleta, Konig, Manige, Mahurkar, Anup, Sun, Yezhou, Stanley, William C, Sztalryd, Carole

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New signaling pathways govern the host response to C. albicans infection in various niches von Liu, Yaoping, Shetty, Amol C, Schwartz, Jennifer A, Bradford, L Latey, Xu, Wenjie, Phan, Qyunh T, Kumari, Priti, Mahurkar, Anup, Mitchell, Aaron P, Ravel, Jacques, Fraser, Claire M, Filler, Scott G, Bruno, Vincent M

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Contextual in situ help for visual data interfaces von Chundury, Pramod, Yalçin, Mehmet Adil, Crabtree, Jonathan, Mahurkar, Anup, Shulman, Lisa M, Elmqvist, Niklas

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