Evolution of the human pathogenic lifestyle in fungi von Rokas, Antonis

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The origins of multicellularity and the early history of the genetic toolkit for animal development von Rokas, Antonis

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Toward a Fully Resolved Fungal Tree of Life von James, Timothy Y, Stajich, Jason E, Hittinger, Chris Todd, Rokas, Antonis

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Novel Information Theory-Based Measures for Quantifying Incongruence among Phylogenetic Trees von Salichos, Leonidas, Stamatakis, Alexandros, Rokas, Antonis

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A Global Coexpression Network Approach for Connecting Genes to Specialized Metabolic Pathways in Plants von Wisecaver, Jennifer H., Borowsky, Alexander T., Tzin, Vered, Jander, Georg, Kliebenstein, Daniel J., Rokas, Antonis

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Contentious relationships in phylogenomic studies can be driven by a handful of genes von Shen, Xing-Xing, Hittinger, Chris Todd, Rokas, Antonis

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The birth, evolution and death of metabolic gene clusters in fungi von Rokas, Antonis, Wisecaver, Jennifer H., Lind, Abigail L.

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ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference von Steenwyk, Jacob L, Buida, 3rd, Thomas J, Li, Yuanning, Shen, Xing-Xing, Rokas, Antonis

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Horizontal Transfer of a Large and Highly Toxic Secondary Metabolic Gene Cluster between Fungi von Slot, Jason C., Rokas, Antonis

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The dawn of relaxed phylogenetics von Steenwyk, Jacob L, Rokas, Antonis

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The triple helix of collagens - an ancient protein structure that enabled animal multicellularity and tissue evolution von Fidler, Aaron L, Boudko, Sergei P, Rokas, Antonis, Hudson, Billy G

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Rooting the Animal Tree of Life von Li, Yuanning, Shen, Xing-Xing, Evans, Benjamin, Dunn, Casey W, Rokas, Antonis

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Evaluating Fast Maximum Likelihood-Based Phylogenetic Programs Using Empirical Phylogenomic Data Sets von Zhou, Xiaofan, Shen, Xing-Xing, Hittinger, Chris Todd, Rokas, Antonis

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Computing the Internode Certainty and Related Measures from Partial Gene Trees von Kobert, Kassian, Salichos, Leonidas, Rokas, Antonis, Stamatakis, Alexandros

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An investigation of irreproducibility in maximum likelihood phylogenetic inference von Shen, Xing-Xing, Li, Yuanning, Hittinger, Chris Todd, Chen, Xue-xin, Rokas, Antonis

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The evolution of fungal metabolic pathways von Wisecaver, Jennifer H, Slot, Jason C, Rokas, Antonis

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Mosaic patterns of selection in genomic regions associated with diverse human traits von Abraham, Abin, LaBella, Abigail L, Capra, John A, Rokas, Antonis

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Extensive Copy Number Variation in Fermentation-Related Genes Among Saccharomyces cerevisiae Wine Strains von Steenwyk, Jacob, Rokas, Antonis

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HGT is widespread in insects and contributes to male courtship in lepidopterans von Li, Yang, Liu, Zhiguo, Liu, Chao, Shi, Zheyi, Pang, Lan, Chen, Chuzhen, Chen, Yun, Pan, Ronghui, Zhou, Wenwu, Chen, Xue-xin, Rokas, Antonis, Huang, Jianhua, Shen, Xing-Xing

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Asgard archaea are the closest prokaryotic relatives of eukaryotes von Spang, Anja, Eme, Laura, Saw, Jimmy H, Caceres, Eva F, Zaremba-Niedzwiedzka, Katarzyna, Lombard, Jonathan, Guy, Lionel, Ettema, Thijs J G

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