THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites von Chang, Hsiao-Han, Worby, Colin J, Yeka, Adoke, Nankabirwa, Joaniter, Kamya, Moses R, Staedke, Sarah G, Dorsey, Grant, Murphy, Maxwell, Neafsey, Daniel E, Jeffreys, Anna E, Hubbart, Christina, Rockett, Kirk A, Amato, Roberto, Kwiatkowski, Dominic P, Buckee, Caroline O, Greenhouse, Bryan

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Flexible and cost-effective genomic surveillance of P. falciparum malaria with targeted nanopore sequencing von de Cesare, Mariateresa, Mwenda, Mulenga, Jeffreys, Anna E., Chirwa, Jacob, Drakeley, Chris, Schneider, Kammerle, Mambwe, Brenda, Glanz, Karolina, Ntalla, Christina, Carrasquilla, Manuela, Portugal, Silvia, Verity, Robert J., Bailey, Jeffrey A., Ghinai, Isaac, Busby, George B., Hamainza, Busiku, Hawela, Moonga, Bridges, Daniel J., Hendry, Jason A.

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Malaria protection due to sickle haemoglobin depends on parasite genotype von Band, Gavin, Leffler, Ellen M., Jallow, Muminatou, Sisay-Joof, Fatoumatta, Ndila, Carolyne M., Macharia, Alexander W., Hubbart, Christina, Jeffreys, Anna E., Rowlands, Kate, Nguyen, Thuy, Gonçalves, Sónia, Ariani, Cristina V., Stalker, Jim, Pearson, Richard D., Amato, Roberto, Drury, Eleanor, Sirugo, Giorgio, d’Alessandro, Umberto, Bojang, Kalifa A., Marsh, Kevin, Peshu, Norbert, Saelens, Joseph W., Diakité, Mahamadou, Taylor, Steve M., Conway, David J., Williams, Thomas N., Rockett, Kirk A., Kwiatkowski, Dominic P.

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A novel locus of resistance to severe malaria in a region of ancient balancing selection von Band, Gavin, Rockett, Kirk A, Spencer, Chris C A, Kwiatkowski, Dominic P

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Resistance to malaria through structural variation of red blood cell invasion receptors von Leffler, Ellen M., Band, Gavin, Busby, George B. J., Kivinen, Katja, Le, Quang Si, Clarke, Geraldine M., Bojang, Kalifa A., Conway, David J., Jallow, Muminatou, Sisay-Joof, Fatoumatta, Bougouma, Edith C., Mangano, Valentina D., Modiano, David, Sirima, Sodiomon B., Achidi, Eric, Apinjoh, Tobias O., Marsh, Kevin, Ndila, Carolyne M., Peshu, Norbert, Williams, Thomas N., Drakeley, Chris, Manjurano, Alphaxard, Reyburn, Hugh, Riley, Eleanor, Kachala, David, Molyneux, Malcolm, Nyirongo, Vysaul, Taylor, Terrie, Thornton, Nicole, Tilley, Louise, Grimsley, Shane, Drury, Eleanor, Stalker, Jim, Cornelius, Victoria, Hubbart, Christina, Jeffreys, Anna E., Rowlands, Kate, Rockett, Kirk A., Spencer, Chris C. A., Kwiatkowski, Dominic P.

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High-throughput genotyping assays for identification of glycophorin B deletion variants in population studies von Amuzu, Dominic SY, Rockett, Kirk A, Leffler, Ellen M, Ansah, Felix, Amoako, Nicholas, Morang’a, Collins M, Hubbart, Christina, Rowlands, Kate, Jeffreys, Anna E, Amenga-Etego, Lucas N, Kwiatkowski, Dominic P, Awandare, Gordon A

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Imputation-based meta-analysis of severe malaria in three African populations von Band, Gavin, Le, Quang Si, Jostins, Luke, Pirinen, Matti, Kivinen, Katja, Jallow, Muminatou, Sisay-Joof, Fatoumatta, Bojang, Kalifa, Pinder, Margaret, Sirugo, Giorgio, Conway, David J, Nyirongo, Vysaul, Kachala, David, Molyneux, Malcolm, Taylor, Terrie, Ndila, Carolyne, Peshu, Norbert, Marsh, Kevin, Williams, Thomas N, Alcock, Daniel, Andrews, Robert, Edkins, Sarah, Gray, Emma, Hubbart, Christina, Jeffreys, Anna, Rowlands, Kate, Schuldt, Kathrin, Clark, Taane G, Small, Kerrin S, Teo, Yik Ying, Kwiatkowski, Dominic P, Rockett, Kirk A, Barrett, Jeffrey C, Spencer, Chris C A

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Genetic surveillance in the Greater Mekong subregion and South Asia to support malaria control and elimination von Jacob, Christopher G, Thuy-Nhien, Nguyen, Mayxay, Mayfong, Maude, Richard J, Quang, Huynh Hong, Hongvanthong, Bouasy, Vanisaveth, Viengxay, Ngo Duc, Thang, Rekol, Huy, van der Pluijm, Rob, von Seidlein, Lorenz, Fairhurst, Rick, Nosten, François, Hossain, Md Amir, Park, Naomi, Goodwin, Scott, Ringwald, Pascal, Chindavongsa, Keobouphaphone, Newton, Paul, Ashley, Elizabeth, Phalivong, Sonexay, Maude, Rapeephan, Leang, Rithea, Huch, Cheah, Dong, Le Thanh, Nguyen, Kim-Tuyen, Nhat, Tran Minh, Hien, Tran Tinh, Nguyen, Hoa, Zdrojewski, Nicole, Canavati, Sara, Sayeed, Abdullah Abu, Uddin, Didar, Buckee, Caroline, Fanello, Caterina I, Onyamboko, Marie, Peto, Thomas, Tripura, Rupam, Amaratunga, Chanaki, Myint Thu, Aung, Delmas, Gilles, Landier, Jordi, Parker, Daniel M, Chau, Nguyen Hoang, Lek, Dysoley, Suon, Seila, Callery, James, Jittamala, Podjanee, Hanboonkunupakarn, Borimas, Pukrittayakamee, Sasithon, Phyo, Aung Pyae, Smithuis, Frank, Lin, Khin, Thant, Myo, Hlaing, Tin Maung, Satpathi, Parthasarathi, Satpathi, Sanghamitra, Behera, Prativa K, Tripura, Amar, Baidya, Subrata, Valecha, Neena, Anvikar, Anupkumar R, Ul Islam, Akhter, Faiz, Abul, Kunasol, Chanon, Drury, Eleanor, Kekre, Mihir, Ali, Mozam, Love, Katie, Rajatileka, Shavanthi, Jeffreys, Anna E, Rowlands, Kate, Hubbart, Christina S, Dhorda, Mehul, Vongpromek, Ranitha, Kotanan, Namfon, Wongnak, Phrutsamon, Almagro Garcia, Jacob, Pearson, Richard D, Ariani, Cristina V, Chookajorn, Thanat, Malangone, Cinzia, Nguyen, T, Stalker, Jim, Jeffery, Ben, Keatley, Jonathan, Johnson, Kimberly J, Muddyman, Dawn, Chan, Xin Hui S, Sillitoe, John, Amato, Roberto, Simpson, Victoria, Gonçalves, Sonia, Rockett, Kirk, Day, Nicholas P, Dondorp, Arjen M, Kwiatkowski, Dominic P, Miotto, Olivo

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Genome-wide and fine-resolution association analysis of malaria in West Africa von Jallow, Muminatou, Teo, Yik Ying, Small, Kerrin S, Rockett, Kirk A, Deloukas, Panos, Clark, Taane G, Kivinen, Katja, Bojang, Kalifa A, Conway, David J, Pinder, Margaret, Sirugo, Giorgio, Sisay-Joof, Fatou, Usen, Stanley, Auburn, Sarah, Bumpstead, Suzannah J, Campino, Susana, Coffey, Alison, Dunham, Andrew, Fry, Andrew E, Green, Angela, Gwilliam, Rhian, Hunt, Sarah E, Inouye, Michael, Jeffreys, Anna E, Mendy, Alieu, Palotie, Aarno, Potter, Simon, Ragoussis, Jiannis, Rogers, Jane, Rowlands, Kate, Somaskantharajah, Elilan, Whittaker, Pamela, Widden, Claire, Donnelly, Peter, Howie, Bryan, Marchini, Jonathan, Morris, Andrew, SanJoaquin, Miguel, Achidi, Eric Akum, Agbenyega, Tsiri, Allen, Angela, Amodu, Olukemi, Corran, Patrick, Djimde, Abdoulaye, Dolo, Amagana, Doumbo, Ogobara K, Drakeley, Chris, Dunstan, Sarah, Evans, Jennifer, Farrar, Jeremy, Fernando, Deepika, Hien, Tran Tinh, Horstmann, Rolf D, Ibrahim, Muntaser, Karunaweera, Nadira, Kokwaro, Gilbert, Koram, Kwadwo A, Lemnge, Martha, Makani, Julie, Marsh, Kevin, Michon, Pascal, Modiano, David, Molyneux, Malcolm E, Mueller, Ivo, Parker, Michael, Peshu, Norbert, Plowe, Christopher V, Puijalon, Odile, Reeder, John, Reyburn, Hugh, Riley, Eleanor M, Sakuntabhai, Anavaj, Singhasivanon, Pratap, Sirima, Sodiomon, Tall, Adama, Taylor, Terrie E, Thera, Mahamadou, Troye-Blomberg, Marita, Williams, Thomas N, Wilson, Michael, Kwiatkowski, Dominic P

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Host genetic polymorphisms and serological response against malaria in a selected population in Sri Lanka von Dewasurendra, Rajika L, Jeffreys, Anna, Gunawardena, Sharmini A, Chandrasekharan, Naduviladath V, Rockett, Kirk, Kwiatkowski, Dominic, Karunaweera, Nadira D

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Candidate human genetic polymorphisms and severe malaria in a Tanzanian population von Manjurano, Alphaxard, Clark, Taane G, Nadjm, Behzad, Mtove, George, Wangai, Hannah, Sepulveda, Nuno, Campino, Susana G, Maxwell, Caroline, Olomi, Raimos, Rockett, Kirk R, Jeffreys, Anna, Riley, Eleanor M, Reyburn, Hugh, Drakeley, Christopher

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Characterisation of the opposing effects of G6PD deficiency on cerebral malaria and severe malarial anaemia von Clarke, Geraldine M, Rockett, Kirk, Kivinen, Katja, Hubbart, Christina, Jeffreys, Anna E, Rowlands, Kate, Jallow, Muminatou, Conway, David J, Bojang, Kalifa A, Pinder, Margaret, Usen, Stanley, Sisay-Joof, Fatoumatta, Sirugo, Giorgio, Toure, Ousmane, Thera, Mahamadou A, Konate, Salimata, Sissoko, Sibiry, Niangaly, Amadou, Poudiougou, Belco, Mangano, Valentina D, Bougouma, Edith C, Sirima, Sodiomon B, Modiano, David, Amenga-Etego, Lucas N, Ghansah, Anita, Koram, Kwadwo A, Wilson, Michael D, Enimil, Anthony, Evans, Jennifer, Amodu, Olukemi K, Olaniyan, Subulade, Apinjoh, Tobias, Mugri, Regina, Ndi, Andre, Ndila, Carolyne M, Uyoga, Sophie, Macharia, Alexander, Peshu, Norbert, Williams, Thomas N, Manjurano, Alphaxard, Sepúlveda, Nuno, Clark, Taane G, Riley, Eleanor, Drakeley, Chris, Reyburn, Hugh, Nyirongo, Vysaul, Kachala, David, Molyneux, Malcolm, Dunstan, Sarah J, Phu, Nguyen Hoan, Quyen, Nguyen Ngoc, Thai, Cao Quang, Hien, Tran Tinh, Manning, Laurens, Laman, Moses, Siba, Peter, Karunajeewa, Harin, Allen, Steve, Allen, Angela, Davis, Timothy Me, Michon, Pascal, Mueller, Ivo, Molloy, Síle F, Campino, Susana, Kerasidou, Angeliki, Cornelius, Victoria J, Hart, Lee, Shah, Shivang S, Band, Gavin, Spencer, Chris Ca, Agbenyega, Tsiri, Achidi, Eric, Doumbo, Ogobara K, Farrar, Jeremy, Marsh, Kevin, Taylor, Terrie, Kwiatkowski, Dominic P

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Conjunctival fibrosis and the innate barriers to Chlamydia trachomatis intracellular infection: a genome wide association study von Roberts, Chrissy h., Franklin, Christopher S., Makalo, Pateh, Joof, Hassan, Sarr, Isatou, Mahdi, Olaimatu S., Sillah, Ansumana, Bah, Momodou, Payne, Felicity, Jeffreys, Anna E., Bottomley, William, Natividad, Angels, Molina-Gonzalez, Sandra, Burr, Sarah E., Preston, Mark, Kwiatkowski, Dominic, Rockett, Kirk A., Clark, Taane G., Burton, Matthew J., Mabey, David C. W., Bailey, Robin, Barroso, Inês, Holland, Martin J.

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Positive selection of a CD36 nonsense variant in sub-Saharan Africa, but no association with severe malaria phenotypes von Fry, Andrew E., Ghansa, Anita, Small, Kerrin S., Palma, Alejandro, Auburn, Sarah, Diakite, Mahamadou, Green, Angela, Campino, Susana, Teo, Yik Y., Clark, Taane G., Jeffreys, Anna E., Wilson, Jonathan, Jallow, Muminatou, Sisay-Joof, Fatou, Pinder, Margaret, Griffiths, Michael J., Peshu, Norbert, Williams, Thomas N., Newton, Charles R., Marsh, Kevin, Molyneux, Malcolm E., Taylor, Terrie E., Koram, Kwadwo A., Oduro, Abraham R., Rogers, William O., Rockett, Kirk A., Sabeti, Pardis C., Kwiatkowski, Dominic P.

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An open dataset of Plasmodium falciparum genome variation in 7,000 worldwide samples von Ahouidi, Ambroise, Ali, Mozam, Almagro-Garcia, Jacob, Amambua-Ngwa, Alfred, Amaratunga, Chanaki, Amato, Roberto, Amenga-Etego, Lucas, Andagalu, Ben, Anderson, Tim J C, Andrianaranjaka, Voahangy, Apinjoh, Tobias, Ariani, Cristina, Ashley, Elizabeth A, Auburn, Sarah, Awandare, Gordon A, Ba, Hampate, Baraka, Vito, Barry, Alyssa E, Bejon, Philip, Bertin, Gwladys I, Boni, Maciej F, Borrmann, Steffen, Bousema, Teun, Branch, Oralee, Bull, Peter C, Busby, George B J, Chookajorn, Thanat, Chotivanich, Kesinee, Claessens, Antoine, Conway, David, Craig, Alister, D'Alessandro, Umberto, Dama, Souleymane, Day, Nicholas Pj, Denis, Brigitte, Diakite, Mahamadou, Djimdé, Abdoulaye, Dolecek, Christiane, Dondorp, Arjen M, Drakeley, Chris, Drury, Eleanor, Duffy, Patrick, Echeverry, Diego F, Egwang, Thomas G, Erko, Berhanu, Fairhurst, Rick M, Faiz, Abdul, Fanello, Caterina A, Fukuda, Mark M, Gamboa, Dionicia, Ghansah, Anita, Golassa, Lemu, Goncalves, Sonia, Hamilton, William L, Harrison, G L Abby, Hart, Lee, Henrichs, Christa, Hien, Tran Tinh, Hill, Catherine A, Hodgson, Abraham, Hubbart, Christina, Imwong, Mallika, Ishengoma, Deus S, Jackson, Scott A, Jacob, Chris G, Jeffery, Ben, Jeffreys, Anna E, Johnson, Kimberly J, Jyothi, Dushyanth, Kamaliddin, Claire, Kamau, Edwin, Kekre, Mihir, Kluczynski, Krzysztof, Kochakarn, Theerarat, Konaté, Abibatou, Kwiatkowski, Dominic P, Kyaw, Myat Phone, Lim, Pharath, Lon, Chanthap, Loua, Kovana M, Maïga-Ascofaré, Oumou, Malangone, Cinzia, Manske, Magnus, Marfurt, Jutta, Marsh, Kevin, Mayxay, Mayfong, Miles, Alistair, Miotto, Olivo, Mobegi, Victor, Mokuolu, Olugbenga A, Montgomery, Jacqui, Mueller, Ivo, Newton, Paul N, Nguyen, Thuy, Nguyen, Thuy-Nhien, Noedl, Harald, Nosten, Francois, Noviyanti, Rintis, Nzila, Alexis, Ochola-Oyier, Lynette I

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Haplotype heterogeneity and low linkage disequilibrium reduce reliable prediction of genotypes for the ‑α 3.7I form of α-thalassaemia using genome-wide microarray data von Ndila, Carolyne M, Nyirongo, Vysaul, Macharia, Alexander W, Jeffreys, Anna E, Rowlands, Kate, Hubbart, Christina, Busby, George B J, Band, Gavin, Harding, Rosalind M, Rockett, Kirk A, Williams, Thomas N

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Geographic-genetic analysis of Plasmodium falciparum parasite populations from surveys of primary school children in Western Kenya von Omedo, Irene, Mogeni, Polycarp, Rockett, Kirk, Kamau, Alice, Hubbart, Christina, Jeffreys, Anna, Ochola-Oyier, Lynette Isabella, de Villiers, Etienne P., Gitonga, Caroline W., Noor, Abdisalan M., Snow, Robert W., Kwiatkowski, Dominic, Bejon, Philip

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Haplotype heterogeneity and low linkage disequilibrium reduce reliable prediction of genotypes for the ‑α3.7I form of α-thalassaemia using genome-wide microarray data von Ndila, Carolyne M., Nyirongo, Vysaul, Macharia, Alexander W., Jeffreys, Anna E., Rowlands, Kate, Hubbart, Christina, Busby, George B. J., Band, Gavin, Harding, Rosalind M., Rockett, Kirk A., Williams, Thomas N.

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Genetic diversity of the African malaria vector Anopheles gambiae von Miles, Alistair, Harding, Nicholas J, Bott, Giordano, Clarkson, Chris S, Anto, Tiago, Kozak, Krzysztof, Schrider, Daniel R, Kern, Andrew D, Redmond, Seth, Sharakhov, Igor, Pearson, Richard D, Bergey, Christina, Fontaine, Michael C, Donnelly, Martin J, Lawniczak, Mara K. N, Kwiatkowski, Dominic P, Ayala, Diego, Besansky, Nora J, Burt, Austin, Caputo, Beniamino, della Torre, Alessandra, Godfray, H. Charles J, Hahn, Matthew W, Midega, Janet, Neafsey, Daniel E, OLoughlin, Samantha, Pinto, Joo, Riehle, Michelle M, Vernick, Kenneth D, Weetman, David, Wilding, Craig S, White, Bradley J, Troco, Arlete D, Diabat, Abdoulaye, Costantini, Carlo, Rohatgi, Kyanne R, Elissa, Nohal, Coulibaly, Boubacar, Dinis, Joo, Mbogo, Charles, Bejon, Philip, Mawejje, Henry D, Stalker, Jim, Rockett, Kirk, Drury, Eleanor, Mead, Daniel, Jeffreys, Anna, Hubbart, Christina, Rowlands, Kate, Isaacs, Alison T, Jyothi, Dushyanth, Malangone, Cinzia, Vauterin, Paul, Jeffery, Ben, Wright, Ian, Hart, Lee, Kluczy?ski, Krzysztof, Cornelius, Victoria, MacInnis, Bronwyn, Henrichs, Christa, Giacomantonio, Rachel

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Geographic-genetic analysis of Plasmodium falciparum parasite populations from surveys of primary school children in Western Kenya von Omedo, Irene, Mogeni, Polycarp, Rockett, Kirk, Kamau, Alice, Hubbart, Christina, Jeffreys, Anna, Ochola-Oyier, Lynette Isabella, de Villiers, Etienne P, Gitonga, Caroline W, Noor, Abdisalan M, Snow, Robert W, Kwiatkowski, Dominic, Bejon, Philip

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