GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database von Schriml, Lynn M, Arze, Cesar, Nadendla, Suvarna, Ganapathy, Anu, Felix, Victor, Mahurkar, Anup, Phillippy, Katherine, Gussman, Aaron, Angiuoli, Sam, Ghedin, Elodie, White, Owen, Hall, Neil

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Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation von Angiuoli, Samuel V., Gussman, Aaron, Klimke, William, Cochrane, Guy, Field, Dawn, Garrity, George M., Kodira, Chinnappa D., Kyrpides, Nikos, Madupu, Ramana, Markowitz, Victor, Tatusova, Tatiana, Thomson, Nick, White, Owen

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Whole genome comparison of the A. fumigatus family von Wortman, J. R., Fedorova, N., Crabtree, J., Joardar, V., Maiti, R., Haas, B. J., Amedeo, P., Lee, E., Angiuoli, S. V., Jiang, B., Anderson, M. J., Denning, D. W., White, O. R., Nierman, W. C.

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588P PLCRC-PROVENC3 study: Prognostic value of post-surgery liquid biopsy circulating tumor DNA in stage III colon cancer patients von Rubio-Alarcón, C., Franken, I.A., van Nassau, S.C.M.W., Schraa, S., Meiqari, L., Ketelaars, S., Velculescu, V., Angiuoli, S., Georgiadis, A., Riley, D., Greco, C., Van Den Broek, D., Punt, C.J.A., Coupé, V., Koopman, M., Roodhart, J.M.L., Meijer, G., Sausen, M., Vink, G.R., Fijneman, R.

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Global Phylogeny of Mycobacterium tuberculosis Based on Single Nucleotide Polymorphism (SNP) Analysis: Insights into Tuberculosis Evolution, Phylogenetic Accuracy of Other DNA Fing... von Filliol, Ingrid, Motiwala, Alifiya S, Cavatore, Magali, Qi, Weihong, Hazbón, Manzour Hernando, Bobadilla del Valle, Miriam, Fyfe, Janet, García-García, Lourdes, Rastogi, Nalin, Sola, Christophe, Zozio, Thierry, Guerrero, Marta Inírida, León, Clara Inés, Crabtree, Jonathan, Angiuoli, Sam, Eisenach, Kathleen D, Durmaz, Riza, Joloba, Moses L, Rendón, Adrian, Sifuentes-Osornio, José, Ponce de León, Alfredo, Cave, M Donald, Fleischmann, Robert, Whittam, Thomas S, Alland, David

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Collaborating to Compete: Blood Profiling Atlas in Cancer (BloodPAC) Consortium von Grossman, RL, Abel, B, Angiuoli, S, Barrett, JC, Bassett, D, Bramlett, K, Blumenthal, GM, Carlsson, A, Cortese, R, DiGiovanna, J, Davis‐Dusenbery, B, Dittamore, R, Eberhard, DA, Febbo, P, Fitzsimons, M, Flamig, Z, Godsey, J, Goswami, J, Gruen, A, Ortuño, F, Han, J, Hayes, D, Hicks, J, Holloway, D, Hovelson, D, Johnson, J, Juhl, H, Kalamegham, R, Kamal, R, Kang, Q, Kelloff, GJ, Klozenbuecher, M, Kolatkar, A, Kuhn, P, Langone, K, Leary, R, Loverso, P, Manmathan, H, Martin, A‐M, Martini, J, Miller, D, Mitchell, M, Morgan, T, Mulpuri, R, Nguyen, T, Otto, G, Pathak, A, Peters, E, Philip, R, Posadas, E, Reese, D, Reese, MG, Robinson, D, Dei Rossi, A, Sakul, H, Schageman, J, Singh, S, Scher, HI, Schmitt, K, Silvestro, A, Simmons, J, Simmons, T, Sislow, J, Talasaz, A, Tang, P, Tewari, M, Tomlins, S, Toukhy, H, Tseng, HR, Tuck, M, Tzou, A, Vinson, J, Wang, Y, Wells, W, Welsh, A, Wilbanks, J, Wolf, J, Young, L, Lee, JSH, Leiman, LC

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Complete Genome Sequence of a Virulent Isolate of Streptococcus pneumoniae von Tettelin, Hervé, Nelson, Karen E., Paulsen, Ian T., Eisen, Jonathan A., Read, Timothy D., Peterson, Scott, Heidelberg, John, DeBoy, Robert T., Haft, Daniel H., Dodson, Robert J., Durkin, A. Scott, Gwinn, Michelle, Kolonay, James F., Nelson, William C., Peterson, Jeremy D., Umayam, Lowell A., White, Owen, Salzberg, Steven L., Lewis, Matthew R., Radune, Diana, Holtzapple, Erik, Khouri, Hoda, Wolf, Alex M., Utterback, Terry R., Hansen, Cheryl L., McDonald, Lisa A., Feldblyum, Tamara V., Angiuoli, Samuel, Dickinson, Tanja, Hickey, Erin K., Holt, Ingeborg E., Loftus, Brendan J., Yang, Fan, Smith, Hamilton O., Venter, J. Craig, Dougherty, Brian A., Morrison, Donald A., Hollingshead, Susan K., Fraser, Claire M.

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Genome Analysis of Multiple Pathogenic Isolates of Streptococcus agalactiae: Implications for the Microbial "Pan-Genome" von Tettelin, Hervé, Masignani, Vega, Cieslewicz, Michael J., Donati, Claudio, Medini, Duccio, Ward, Naomi L., Angiuoli, Samuel V., Crabtree, Jonathan, Jones, Amanda L., Durkin, A. Scott, DeBoy, Robert T., Davidsen, Tanja M., Mora, Marirosa, Scarselli, Maria, Immaculada Margarit y Ros, Peterson, Jeremy D., Hauser, Christopher R., Sundaram, Jaideep P., Nelson, William C., Madupu, Ramana, Brinkac, Lauren M., Dodson, Robert J., Rosovitz, Mary J., Sullivan, Steven A., Daugherty, Sean C., Haft, Daniel H., Selengut, Jeremy, Gwinn, Michelle L., Zhou, Liwei, Zafar, Nikhat, Khouri, Hoda, Radune, Diana, Dimitrov, George, Watkins, Kisha, Kevin J. B. O'Connor, Smith, Shannon, Utterback, Teresa R., White, Owen, Rubens, Craig E., Grandi, Guido, Madoff, Lawrence C., Kasper, Dennis L., Telford, John L., Wessels, Michael R., Rappuoli, Rino, Fraser, Claire M.

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Insights on Evolution of Virulence and Resistance from the Complete Genome Analysis of an Early Methicillin-Resistant Staphylococcus aureus Strain and a Biofilm-Producing Methicill... von GILL, Steven R, FOUTS, Derrick E, DODSON, Robert J, DAUGHERTY, Sean C, MADUPU, Ramana, ANGIUOLI, Samuel V, DURKIN, A. Scott, HAFT, Daniel H, VAMATHEVAN, Jessica, KHOURI, Hoda, UTTERBACK, Terry, LEE, Chris, ARCHER, Gordon L, DIMITROV, George, LINGXIA JIANG, HAIYING QIN, JAN WEIDMAN, TRAN, Kevin, KANG, Kathy, HANCE, Ioana R, NELSON, Karen E, FRASER, Claire M, MONGODIN, Emmanuel F, DEBOY, Robert T, RAVEL, Jacques, PAULSEN, Ian T, KOLONAY, James F, BRINKAC, Lauren, BEANAN, Mauren

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Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species von Nelson, K.E, Fouts, D.E, Mongodin, E.F, Ravel, J, DeBoy, R.T, Kolonay, J.F, Rasko, D.A, Angiuoli, S.V, Gill, S.R, Paulsen, I.T, Wonderling, L.D, Uhlich, G.A, Bayles, D.O, Luchansky, J.B

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Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii von Carlton, Jane M, Angiuoli, Samuel V, Suh, Bernard B, Kooij, Taco W, Pertea, Mihaela, Silva, Joana C, Ermolaeva, Maria D, Allen, Jonathan E, Selengut, Jeremy D, Koo, Hean L, Peterson, Jeremy D, Pop, Mihai, Kosack, Daniel S, Shumway, Martin F, Bidwell, Shelby L, Shallom, Shamira J, van Aken, Susan E, Riedmuller, Steven B, Feldblyum, Tamara V, Cho, Jennifer K, Quackenbush, John, Sedegah, Martha, Shoaibi, Azadeh, Cummings, Leda M, Florens, Laurence, Yates, John R, Raine, J. Dale, Sinden, Robert E, Harris, Michael A, Cunningham, Deirdre A, Preiser, Peter R, Bergman, Lawrence W, Vaidya, Akhil B, van Lin, Leo H, Janse, Chris J, Waters, Andrew P, Smith, Hamilton O, White, Owen R, Salzberg, Steven L, Venter, J. Craig, Fraser, Claire M, Hoffman, Stephen L, Gardner, Malcolm J, Carucci, Daniel J

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Genome Sequence of Theileria parva, a Bovine Pathogen That Transforms Lymphocytes von Gardner, Malcolm J., Bishop, Richard, Shah, Trushar, de Villiers, Etienne P., Carlton, Jane M., Hall, Neil, Ren, Qinghu, Paulsen, Ian T., Pain, Arnab, Berriman, Matthew, Robert J. M. Wilson, Sato, Shigeharu, Ralph, Stuart A., Mann, David J., Xiong, Zikai, Shallom, Shamira J., Weidman, Janice, Jiang, Lingxia, Lynn, Jeffery, Weaver, Bruce, Shoaibi, Azadeh, Domingo, Alexander R., Wasawo, Delia, Crabtree, Jonathan, Wortman, Jennifer R., Haas, Brian, Angiuoli, Samuel V., Creasy, Todd H., Lu, Charles, Suh, Bernard, Silva, Joana C., Utterback, Teresa R., Feldblyum, Tamara V., Pertea, Mihaela, Allen, Jonathan, Nierman, William C., Evans L. N. Taracha, Salzberg, Steven L., White, Owen R., Fitzhugh, Henry A., Morzaria, Subhash, Venter, J. Craig, Fraser, Claire M., Nene, Vishvanath

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The genome sequence of Bacillus cereus ATCC 10987 reveals metabolic adaptations and a large plasmid related to Bacillus anthracis pXO1 von Rasko, David A., Ravel, Jacques, Økstad, Ole Andreas, Helgason, Erlendur, Cer, Regina Z., Jiang, Lingxia, Shores, Kelly A., Fouts, Derrick E., Tourasse, Nicolas J., Angiuoli, Samuel V., Kolonay, James, Nelson, William C., Kolstø, Anne‐Brit, Fraser, Claire M., Read, Timothy D.

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Gene synteny and evolution of genome architecture in trypanosomatids von Ghedin, Elodie, Bringaud, Frederic, Peterson, Jeremy, Myler, Peter, Berriman, Matthew, Ivens, Alasdair, Andersson, Björn, Bontempi, Esteban, Eisen, Jonathan, Angiuoli, Sam, Wanless, David, Von Arx, Anna, Murphy, Lee, Lennard, Nicola, Salzberg, Steven, Adams, Mark D, White, Owen, Hall, Neil, Stuart, Kenneth, Fraser, Claire M, El-Sayed, Najib M.A

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Toward a Standards-Compliant Genomic and Metagenomic Publication Record von Garrity, George M., Field, Dawn, Kyrpides, Nikos, Hirschman, Lynette, Sansone, Susanna-Assunta, Angiuoli, Samuel, Cole, James R., Glöckner, Frank Oliver, Kolker, Eugene, Kowalchuk, George, Moran, Mary Ann, Ussery, Dave, White, Owen

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Abstract P2-01-04: A method for comprehensive genomic analysis of cell free DNA von Parpart-Li, S, Angiuoli, SV, Chesnick, B, Galens, K, Jones, S, Kadan, M, Kann, L, Lytle, K, Murphy, D, Nesselbush, M, Phallen, J, Riley, D, Shukla, M, Zhang, T, Husain, H, Velculescu, V, Diaz, LA, Sausen, M

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Meeting Report: The Fifth Genomic Standards Consortium (GSC) Workshop von Field, Dawn, Garrity, George M., Sansone, Susanna-Assunta, Sterk, Peter, Gray, Tanya, Kyrpides, Nikos, Hirschman, Lynette, Glöckner, Frank Oliver, Kottmann, Renzo, Angiuoli, Sam, White, Owen, Dawyndt, Peter, Thomson, Nick, Gil, Inigo San, Morrison, Norman, Tatusova, Tatiana, Mizrachi, Ilene, Vaughan, Robert, Cochrane, Guy, Kagan, Leonid, Murphy, Sean, Schriml, Lynn

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Global Phylogeny of Mycobacterium tuberculosis Based on Single Nucleotide Polymorphism (SNP) Analysis: Insights into Tuberculosis Evolution, Phylogenetic Accuracy of Other DNA Fing... von Filliol, Ingrid, Motiwala, Alifiya S., Cavatore, Magali, Qi, Weihong, Hazbón, Manzour Hernando, Bobadilla del Valle, Miriam, Fyfe, Janet, García-García, Lourdes, Rastogi, Nalin, Sola, Christophe, Zozio, Thierry, Guerrero, Marta Inírida, León, Clara Inés, Crabtree, Jonathan, Angiuoli, Sam, Eisenach, Kathleen D., Durmaz, Riza, Joloba, Moses L., Rendón, Adrian, Sifuentes-Osornio, José, Ponce de León, Alfredo, Cave, M. Donald, Fleischmann, Robert, Whittam, Thomas S., Alland, David

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Meeting Report: The Fourth Genomic Standards Consortium (GSC) Workshop von Field, Dawn, Glöckner, Frank Oliver, Garrity, George M., Gray, Tanya, Sterk, Peter, Cochrane, Guy, Vaughan, Robert, Kolker, Eugene, Kottmann, Renzo, Kyrpides, Nikos, Angiuoli, Sam, Dawyndt, Peter, Guralnick, Robert, Goldstein, Philip, Hall, Neil, Hirschman, Lynette, Kravitz, Saul, Lister, Allyson L., Markowitz, Victor, Thomson, Nick, Whetzel, Trish

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Comparative Requirements for Initiating Clinical Trials (Including IND and CTC) von Angiuoli, Anthony S.

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