Global optimization of mixed-integer nonlinear problems von Adjiman, C. S., Androulakis, I. P., Floudas, C. A.

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From data to QSP models: a pipeline for using Boolean networks for hypothesis inference and dynamic model building von Putnins, M., Campagne, O., Mager, D. E., Androulakis, I. P.

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Mathematical modeling of the circadian dynamics of the neuroendocrine-immune network in experimentally induced arthritis von Rao, R, DuBois, D, Almon, R, Jusko, W J, Androulakis, I P

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A novel non-overlapping bi-clustering algorithm for network generation using living cell array data von Yang, E., Foteinou, P.T., King, K.R., Yarmush, M.L., Androulakis, I.P.

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Analysis of time-series gene expression data: methods, challenges, and opportunities von Androulakis, I P, Yang, E, Almon, R R

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Systems Biology of Circadian-Immune Interactions von Mavroudis, P.D., Scheff, J.D., Calvano, S.E., Androulakis, I.P.

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Modeling endotoxin-induced systemic inflammation using an indirect response approach von Foteinou, P.T., Calvano, S.E., Lowry, S.F., Androulakis, I.P.

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A global optimization method, αBB, for process design von Adjiman, C.S., Androulakis, I.P., Maranas, C.D., Floudas, C.A.

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Networks, biology and systems engineering: A case study in inflammation von Foteinou, P.T., Yang, E., Androulakis, I.P.

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Approaches to asynchronous decentralized decision making von Androulakis, I.P., Reklaitis, G.V.

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Does seasonality of the microbiota contribute to the seasonality of acute gout flares? von Schlesinger, N., Brunetti, L., Androulakis, I.P.

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Solving long-term financial planning problems via global optimization von Maranas, C.D., Androulakis, I.P., Floudas, C.A., Berger, A.J., Mulvey, J.M.

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A global optimization method, αBB, for general twice-differentiable constrained NLPs—II. Implementation and computational results von Adjiman, C.S., Androulakis, I.P., Floudas, C.A.

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Kinetic mechanism reduction based on an integer programming approach von Androulakis, Ioannis P.

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Translational Potential of Systems-Based Models of Inflammation von Foteinou, P.T., Calvano, S.E., Lowry, S.F., Androulakis, I.P.

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Model building using bi-level optimization von Saharidis, G. K. D., Androulakis, I. P., Ierapetritou, M. G.

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A genetic algorithmic framework for process design and optimization von Androulakis, I.P., Venkatasubramanian, V.

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Prediction of Oligopeptide Conformations via Deterministic Global Optimization von Androulakis, I P, Maranas, C D, Floudas, C A

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Informative gene selection and design of regulatory networks using integer optimization von Yang, E., Maguire, T., Yarmush, M.L., Androulakis, I.P.

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Selecting maximally informative genes von Androulakis, Ioannis P.

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