Matrix eQTL: ultra fast eQTL analysis via large matrix operations von SHABALIN, Andrey A

Volltext

Reconstruction of a low-rank matrix in the presence of Gaussian noise von Shabalin, Andrey A., Nobel, Andrew B.

Volltext

Genome-Wide Association Study of Suicide Death and Polygenic Prediction of Clinical Antecedents von Docherty, Anna R, Shabalin, Andrey A, DiBlasi, Emily, Monson, Eric, Mullins, Niamh, Adkins, Daniel E, Bacanu, Silviu-Alin, Bakian, Amanda V, Crowell, Sheila, Chen, Danli, Darlington, Todd M, Callor, William B, Christensen, Erik D, Gray, Douglas, Keeshin, Brooks, Klein, Michael, Anderson, John S, Jerominski, Leslie, Hayward, Caroline, Porteous, David J, McIntosh, Andrew, Li, Qingqin, Coon, Hilary

Volltext

Methylome-wide association findings for major depressive disorder overlap in blood and brain and replicate in independent brain samples von Aberg, Karolina A., Dean, Brian, Shabalin, Andrey A., Chan, Robin F., Han, Laura K. M., Zhao, Min, van Grootheest, Gerard, Xie, Lin Y., Milaneschi, Yuri, Clark, Shaunna L., Turecki, Gustavo, Penninx, Brenda W. J. H., van den Oord, Edwin J. C. G.

Volltext

Harnessing changes in open chromatin determined by ATAC-seq to generate insulin-responsive reporter constructs von Merrill, Collin B, Montgomery, Austin B, Pabon, Miguel A, Shabalin, Andrey A, Rodan, Aylin R, Rothenfluh, Adrian

Volltext

Cell Type–Specific Methylome-wide Association Studies Implicate Neurotrophin and Innate Immune Signaling in Major Depressive Disorder von Chan, Robin F., Turecki, Gustavo, Shabalin, Andrey A., Guintivano, Jerry, Zhao, Min, Xie, Lin Y., van Grootheest, Gerard, Kaminsky, Zachary A., Dean, Brian, Penninx, Brenda W.J.H., Aberg, Karolina A., van den Oord, Edwin J.C.G.

Volltext

High density methylation QTL analysis in human blood via next-generation sequencing of the methylated genomic DNA fraction von McClay, Joseph L, Shabalin, Andrey A, Dozmorov, Mikhail G, Adkins, Daniel E, Kumar, Gaurav, Nerella, Srilaxmi, Clark, Shaunna L, Bergen, Sarah E, Hultman, Christina M, Magnusson, Patrik K E, Sullivan, Patrick F, Aberg, Karolina A, van den Oord, Edwin J C G

Volltext

Merging two gene-expression studies via cross-platform normalization von Shabalin, Andrey A., Tjelmeland, Håkon, Fan, Cheng, Perou, Charles M., Nobel, Andrew B.

Volltext

Polygenic risk scores for asthma and allergic disease associate with COVID-19 severity in 9/11 responders von Waszczuk, Monika A, Morozova, Olga, Lhuillier, Elizabeth, Docherty, Anna R, Shabalin, Andrey A, Yang, Xiaohua, Carr, Melissa A, Clouston, Sean A P, Kotov, Roman, Luft, Benjamin J

Volltext

seeQTL: a searchable database for human eQTLs von Xia, Kai, Shabalin, Andrey A., Huang, Shunping, Madar, Vered, Zhou, Yi-Hui, Wang, Wei, Zou, Fei, Sun, Wei, Sullivan, Patrick F., Wright, Fred A.

Volltext

Phenome-wide diagnostic comparison among suicide deaths and living individuals with chronic pain diagnoses von DiBlasi, Emily, Kaufman, Erin A, Webster, Sam, Hagn, Emily E, Shabalin, Andrey A, Chen, Danli, Han, Seonggyun, Jawish, Rana, Monson, Eric T, Staley, Michael J, Keeshin, Brooks R, Docherty, Anna R, Bakian, Amanda V, Okifuji, Akiko, Coon, Hilary

Volltext

The benefit of diagnostic whole genome sequencing in schizophrenia and other psychotic disorders von Alkelai, Anna, Greenbaum, Lior, Docherty, Anna R., Shabalin, Andrey A., Povysil, Gundula, Malakar, Ayan, Hughes, Daniel, Delaney, Shannon L., Peabody, Emma P., McNamara, James, Gelfman, Sahar, Baugh, Evan H., Zoghbi, Anthony W., Harms, Matthew B., Hwang, Hann-Shyan, Grossman-Jonish, Anat, Aggarwal, Vimla, Heinzen, Erin L., Jobanputra, Vaidehi, Pulver, Ann E., Lerer, Bernard, Goldstein, David B.

Volltext

Building a schizophrenia genetic network: transcription factor 4 regulates genes involved in neuronal development and schizophrenia risk von Xia, Hanzhang, Jahr, Fay M, Kim, Nak-Kyeong, Xie, Linying, Shabalin, Andrey A, Bryois, Julien, Sweet, Douglas H, Kronfol, Mohamad M, Palasuberniam, Preetha, McRae, MaryPeace, Riley, Brien P, Sullivan, Patrick F, van den Oord, Edwin J, McClay, Joseph L

Volltext

Test-statistic inflation in methylome-wide association studies von Guintivano, Jerry, Shabalin, Andrey A, Chan, Robin F, Rubinow, David R, Sullivan, Patrick F, Meltzer-Brody, Samantha, Aberg, Karolina A, van den Oord, Edwin J C G

Volltext

Enrichment methods provide a feasible approach to comprehensive and adequately powered investigations of the brain methylome von Chan, Robin F, Shabalin, Andrey A, Xie, Lin Y, Adkins, Daniel E, Zhao, Min, Turecki, Gustavo, Clark, Shaunna L, Aberg, Karolina A, van den Oord, Edwin J C G

Volltext

A MBD-seq protocol for large-scale methylome-wide studies with (very) low amounts of DNA von Aberg, Karolina A., Chan, Robin F., Shabalin, Andrey A., Zhao, Min, Turecki, Gustavo, Staunstrup, Nicklas Heine, Starnawska, Anna, Mors, Ole, Xie, Lin Y., van den Oord, Edwin JCG

Volltext

A Whole Methylome CpG-SNP Association Study of Psychosis in Blood and Brain Tissue von van den Oord, Edwin J C G, Clark, Shaunna L, Xie, Lin Ying, Shabalin, Andrey A, Dozmorov, Mikhail G, Kumar, Gaurav, Vladimirov, Vladimir I, Magnusson, Patrik K E, Aberg, Karolina A

Volltext

Assessment of suicide attempt and death in bipolar affective disorder: a combined clinical and genetic approach von Monson, Eric T., Shabalin, Andrey A., Docherty, Anna R., DiBlasi, Emily, Bakian, Amanda V., Li, Qingqin S., Gray, Douglas, Keeshin, Brooks, Crowell, Sheila E., Mullins, Niamh, Willour, Virginia L., Coon, Hilary

Volltext

The Set2/Rpd3S pathway suppresses cryptic transcription without regard to gene length or transcription frequency von Lickwar, Colin R, Rao, Bhargavi, Shabalin, Andrey A, Nobel, Andrew B, Strahl, Brian D, Lieb, Jason D

Volltext

Resolving the polymorphism-in-probe problem is critical for correct interpretation of expression QTL studies von Ramasamy, Adaikalavan, Trabzuni, Daniah, Gibbs, J Raphael, Dillman, Allissa, Hernandez, Dena G, Arepalli, Sampath, Walker, Robert, Smith, Colin, Ilori, Gigaloluwa Peter, Shabalin, Andrey A, Li, Yun, Singleton, Andrew B, Cookson, Mark R, Hardy, John, Ryten, Mina, Weale, Michael E

Volltext