Gut Microbiota-Produced Succinate Promotes C. difficile Infection after Antibiotic Treatment or Motility Disturbance von Ferreyra, Jessica A., Wu, Katherine J., Hryckowian, Andrew J., Bouley, Donna M., Weimer, Bart C., Sonnenburg, Justin L.

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A short chain fatty acid–centric view of Clostridioides difficile pathogenesis von Gregory, Anna L, Pensinger, Daniel A, Hryckowian, Andrew J

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Long-term persistence of crAss-like phage crAss001 is associated with phase variation in Bacteroides intestinalis von Shkoporov, Andrey N, Khokhlova, Ekaterina V, Stephens, Niamh, Hueston, Cara, Seymour, Samuel, Hryckowian, Andrew J, Scholz, Dimitri, Ross, R Paul, Hill, Colin

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Bacteroides thetaiotaomicron-Infecting Bacteriophage Isolates Inform Sequence-Based Host Range Predictions von Hryckowian, Andrew J., Merrill, Bryan D., Porter, Nathan T., Van Treuren, William, Nelson, Eric J., Garlena, Rebecca A., Russell, Daniel A., Martens, Eric C., Sonnenburg, Justin L.

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Exogenous butyrate inhibits butyrogenic metabolism and alters virulence phenotypes in Clostridioides difficile von Pensinger, Daniel A, Dobrila, Horia A, Stevenson, David M, Hryckowian, Nicole D, Amador-Noguez, Daniel, Hryckowian, Andrew J

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Western diet regulates immune status and the response to LPS-driven sepsis independent of diet-associated microbiome von Napier, Brooke A., Andres-Terre, Marta, Massis, Liliana M., Hryckowian, Andrew J., Higginbottom, Steven K., Cumnock, Katherine, Casey, Kerriann M., Haileselassie, Bereketeab, Lugo, Kyler A., Schneider, David S., Sonnenburg, Justin L., Monack, Denise M.

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Butyrate Differentiates Permissiveness to Clostridioides difficile Infection and Influences Growth of Diverse C. difficile Isolates von Pensinger, Daniel A, Fisher, Andrea T, Dobrila, Horia A, Van Treuren, William, Gardner, Jackson O, Higginbottom, Steven K, Carter, Matthew M, Schumann, Benjamin, Bertozzi, Carolyn R, Anikst, Victoria, Martin, Cody, Robilotti, Elizabeth V, Chow, Jo May, Buck, Rachael H, Tompkins, Lucy S, Sonnenburg, Justin L, Hryckowian, Andrew J

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Microbiome Management for the 21st Century and Beyond von Hryckowian, Andrew J

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Re-framing the importance of Group B Streptococcus as a gut-resident pathobiont von Ling, Joie, Hryckowian, Andrew J

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High-throughput low-cost nl-qPCR for enteropathogen detection: A proof-of-concept among hospitalized patients in Bangladesh von Flaherty, Katelyn E, Grembi, Jessica A, Ramachandran, Vasavi V, Haque, Farhana, Khatun, Selina, Rahman, Mahmudu, Maples, Stace, Becker, Torben K, Spormann, Alfred M, Schoolnik, Gary K, Hryckowian, Andrew J, Nelson, Eric J

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RpoS contributes to phagocyte oxidase-mediated stress resistance during urinary tract infection by Escherichia coli CFT073 von Hryckowian, Andrew J, Welch, Rodney A

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A gut bacterial pathway metabolizes aromatic amino acids into nine circulating metabolites von Dodd, Dylan, Spitzer, Matthew H., Van Treuren, William, Merrill, Bryan D., Hryckowian, Andrew J., Higginbottom, Steven K., Le, Anthony, Cowan, Tina M., Nolan, Garry P., Fischbach, Michael A., Sonnenburg, Justin L.

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dsdA Does Not Affect Colonization of the Murine Urinary Tract by Escherichia coli CFT073 von Hryckowian, Andrew J, Baisa, Gary A, Schwartz, Kevin J, Welch, Rodney A

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The Clinical Drug Ebselen Attenuates Inflammation and Promotes Microbiome Recovery in Mice after Antibiotic Treatment for CDI von Garland, Megan, Hryckowian, Andrew J., Tholen, Martina, Oresic Bender, Kristina, Van Treuren, William W., Loscher, Sebastian, Sonnenburg, Justin L., Bogyo, Matthew

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A metagenomics pipeline reveals insertion sequence-driven evolution of the microbiota von Kirsch, Joshua M., Hryckowian, Andrew J., Duerkop, Breck A.

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The emerging metabolic view of Clostridium difficile pathogenesis von Hryckowian, Andrew J, Pruss, Kali M, Sonnenburg, Justin L

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Microbiome Management for the 21st Century and Beyond von Hryckowian, Andrew J.

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Microbiota-accessible carbohydrates suppress Clostridium difficile infection in a murine model von Hryckowian, Andrew J., Van Treuren, William, Smits, Samuel A., Davis, Nicole M., Gardner, Jackson O., Bouley, Donna M., Sonnenburg, Justin L.

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Independent host- and bacterium-based determinants protect a model symbiosis from phage predation von Lynch, Jonathan B., Bennett, Brittany D., Merrill, Bryan D., Ruby, Edward G., Hryckowian, Andrew J.

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Comparative Genomic Analysis of 60 Mycobacteriophage Genomes: Genome Clustering, Gene Acquisition, and Gene Size von Hatfull, Graham F., Jacobs-Sera, Deborah, Lawrence, Jeffrey G., Pope, Welkin H., Russell, Daniel A., Ko, Ching-Chung, Weber, Rebecca J., Patel, Manisha C., Germane, Katherine L., Edgar, Robert H., Hoyte, Natasha N., Bowman, Charles A., Tantoco, Anthony T., Paladin, Elizabeth C., Myers, Marlana S., Smith, Alexis L., Grace, Molly S., Pham, Thuy T., O'Brien, Matthew B., Vogelsberger, Amy M., Hryckowian, Andrew J., Wynalek, Jessica L., Donis-Keller, Helen, Bogel, Matt W., Peebles, Craig L., Cresawn, Steven G., Hendrix, Roger W.

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