Methods for mapping 3D chromosome architecture von Kempfer, Rieke, Pombo, Ana

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A single-cell atlas of mouse brain macrophages reveals unique transcriptional identities shaped by ontogeny and tissue environment von Van Hove, Hannah, Martens, Liesbet, Scheyltjens, Isabelle, De Vlaminck, Karen, Pombo Antunes, Ana Rita, De Prijck, Sofie, Vandamme, Niels, De Schepper, Sebastiaan, Van Isterdael, Gert, Scott, Charlotte L., Aerts, Jeroen, Berx, Geert, Boeckxstaens, Guy E., Vandenbroucke, Roosmarijn E., Vereecke, Lars, Moechars, Diederik, Guilliams, Martin, Van Ginderachter, Jo A., Saeys, Yvan, Movahedi, Kiavash

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Understanding the glioblastoma immune microenvironment as basis for the development of new immunotherapeutic strategies von Antunes, Ana Rita Pombo, Scheyltjens, Isabelle, Duerinck, Johnny, Neyns, Bart, Movahedi, Kiavash, Van Ginderachter, Jo A.

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Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations von Branco, Miguel R, Pombo, Ana

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Polymer physics predicts the effects of structural variants on chromatin architecture von Bianco, Simona, Lupiáñez, Darío G., Chiariello, Andrea M., Annunziatella, Carlo, Kraft, Katerina, Schöpflin, Robert, Wittler, Lars, Andrey, Guillaume, Vingron, Martin, Pombo, Ana, Mundlos, Stefan, Nicodemi, Mario

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Complexity of chromatin folding is captured by the strings and binders switch model von Barbieri, Mariano, Chotalia, Mita, Fraser, James, Lavitas, Liron-Mark, Dostie, Josée, Pombo, Ana, Nicodemi, Mario

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Modifications of RNA polymerase II are pivotal in regulating gene expression states von Brookes, Emily, Pombo, Ana

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Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin von Fiorillo, Luca, Musella, Francesco, Conte, Mattia, Kempfer, Rieke, Chiariello, Andrea M., Bianco, Simona, Kukalev, Alexander, Irastorza-Azcarate, Ibai, Esposito, Andrea, Abraham, Alex, Prisco, Antonella, Pombo, Ana, Nicodemi, Mario

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Differential plasticity and fate of brain-resident and recruited macrophages during the onset and resolution of neuroinflammation von De Vlaminck, Karen, Van Hove, Hannah, Kancheva, Daliya, Scheyltjens, Isabelle, Pombo Antunes, Ana Rita, Bastos, Jonathan, Vara-Perez, Monica, Ali, Leen, Mampay, Myrthe, Deneyer, Lauren, Miranda, Juliana Fabiani, Cai, Ruiyao, Bouwens, Luc, De Bundel, Dimitri, Caljon, Guy, Stijlemans, Benoît, Massie, Ann, Van Ginderachter, Jo A., Vandenbroucke, Roosmarijn E., Movahedi, Kiavash

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Formation of new chromatin domains determines pathogenicity of genomic duplications von Franke, Martin, Ibrahim, Daniel M., Andrey, Guillaume, Schwarzer, Wibke, Heinrich, Verena, Schöpflin, Robert, Kraft, Katerina, Kempfer, Rieke, Jerković, Ivana, Chan, Wing-Lee, Spielmann, Malte, Timmermann, Bernd, Wittler, Lars, Kurth, Ingo, Cambiaso, Paola, Zuffardi, Orsetta, Houge, Gunnar, Lambie, Lindsay, Brancati, Francesco, Pombo, Ana, Vingron, Martin, Spitz, Francois, Mundlos, Stefan

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Mechanical regulation of transcription controls Polycomb-mediated gene silencing during lineage commitment von Le, Huy Quang, Ghatak, Sushmita, Yeung, Ching-Yan Chloé, Tellkamp, Frederik, Günschmann, Christian, Dieterich, Christoph, Yeroslaviz, Assa, Habermann, Bianca, Pombo, Ana, Niessen, Carien M., Wickström, Sara A.

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Gene activation by metazoan enhancers: Diverse mechanisms stimulate distinct steps of transcription von Beagrie, Robert A., Pombo, Ana

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Specialization of 3D genome structure in different cell types and states von Pombo, Ana

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Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation von Fraser, James, Ferrai, Carmelo, Chiariello, Andrea M, Schueler, Markus, Rito, Tiago, Laudanno, Giovanni, Barbieri, Mariano, Moore, Benjamin L, Kraemer, Dorothee CA, Aitken, Stuart, Xie, Sheila Q, Morris, Kelly J, Itoh, Masayoshi, Kawaji, Hideya, Jaeger, Ines, Hayashizaki, Yoshihide, Carninci, Piero, Forrest, Alistair RR, Semple, Colin A, Dostie, Josée, Pombo, Ana, Nicodemi, Mario

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Ring1-mediated ubiquitination of H2A restrains poised RNA polymerase II at bivalent genes in mouse ES cells von Fisher, Amanda G, Pombo, Ana, Stock, Julie K, Giadrossi, Sara, Casanova, Miguel, Brookes, Emily, Vidal, Miguel, Koseki, Haruhiko, Brockdorff, Neil

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Evaluating sea cucumbers as extractive species for benthic bioremediation in mussel farms von Grosso, Luca, Rampacci, Massimo, Pensa, Davide, Fianchini, Alessandra, Batır, Esin, Aydın, İlhan, Ciriminna, Laura, Felix, Pedro M., Pombo, Ana, Lovatelli, Alessandro, Vizzini, Salvatrice, Scardi, Michele, Rakaj, Arnold

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Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression von Kar, Gozde, Kim, Jong Kyoung, Kolodziejczyk, Aleksandra A., Natarajan, Kedar Nath, Torlai Triglia, Elena, Mifsud, Borbala, Elderkin, Sarah, Marioni, John C., Pombo, Ana, Teichmann, Sarah A.

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Aedes aegypti: egg morphology and embryonic development von Mundim-Pombo, Ana Paula Miranda, Carvalho, Hianka Jasmyne Costa de, Rodrigues Ribeiro, Rafaela, León, Marisol, Maria, Durvanei Augusto, Miglino, Maria Angélica

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Physical and chemical tagging methods for the sea urchin Paracentrotus lividus (Echinodermata: Echinoidea) von Santos, Pedro M., Ruivo Quintella, Bernardo, Jacinto, David, Gomes, Ana, Saldanha, Carolina, Lourenço, Sílvia, Mega Lopes, Patrícia, Correia, Maria João, Mateus, David, Cruz, Teresa, Pombo, Ana, Lino Costa, José

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Jarid2 is a PRC2 component in embryonic stem cells required for multi-lineage differentiation and recruitment of PRC1 and RNA Polymerase II to developmental regulators von Fisher, Amanda G, Landeira, David, Sauer, Stephan, Poot, Raymond, Dvorkina, Maria, Mazzarella, Luca, Jørgensen, Helle F, Pereira, C. Filipe, Leleu, Marion, Piccolo, Francesco M, Spivakov, Mikhail, Brookes, Emily, Pombo, Ana, Fisher, Cynthia, Skarnes, William C, Snoek, Tim, Bezstarosti, Karel, Demmers, Jeroen, Klose, Robert J, Casanova, Miguel, Tavares, Ligia, Brockdorff, Neil, Merkenschlager, Matthias

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