Dysregulation in Akt/mTOR/HIF-1 signaling identified by proteo-transcriptomics of SARS-CoV-2 infected cells von Appelberg, Sofia, Gupta, Soham, Svensson Akusjärvi, Sara, Ambikan, Anoop T., Mikaeloff, Flora, Saccon, Elisa, Végvári, Ákos, Benfeitas, Rui, Sperk, Maike, Ståhlberg, Marie, Krishnan, Shuba, Singh, Kamal, Penninger, Josef M., Mirazimi, Ali, Neogi, Ujjwal

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Molecular Characterization and Comparative Genomics of Clinical Hybrid Shiga Toxin-Producing and Enterotoxigenic Escherichia coli (STEC/ETEC) Strains in Sweden von Bai, Xiangning, Zhang, Ji, Ambikan, Anoop, Jernberg, Cecilia, Ehricht, Ralf, Scheutz, Flemming, Xiong, Yanwen, Matussek, Andreas

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Systemic Inflammation and the Increased Risk of Inflamm-Aging and Age-Associated Diseases in People Living With HIV on Long Term Suppressive Antiretroviral Therapy von Babu, Hemalatha, Ambikan, Anoop T, Gabriel, Erin E, Svensson Akusjärvi, Sara, Palaniappan, Alangudi Natarajan, Sundaraj, Vijila, Mupanni, Naveen Reddy, Sperk, Maike, Cheedarla, Narayanaiah, Sridhar, Rathinam, Tripathy, Srikanth P, Nowak, Piotr, Hanna, Luke Elizabeth, Neogi, Ujjwal

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Metabolic Perturbation Associated With COVID-19 Disease Severity and SARS-CoV-2 Replication von Krishnan, Shuba, Nordqvist, Hampus, Ambikan, Anoop T., Gupta, Soham, Sperk, Maike, Svensson-Akusjärvi, Sara, Mikaeloff, Flora, Benfeitas, Rui, Saccon, Elisa, Ponnan, Sivasankaran Munusamy, Rodriguez, Jimmy Esneider, Nikouyan, Negin, Odeh, Amani, Ahlén, Gustaf, Asghar, Muhammad, Sällberg, Matti, Vesterbacka, Jan, Nowak, Piotr, Végvári, Ákos, Sönnerborg, Anders, Treutiger, Carl Johan, Neogi, Ujjwal

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Parechovirus infection in human brain organoids: host innate inflammatory response and not neuro-infectivity correlates to neurologic disease von Capendale, Pamela E., García-Rodríguez, Inés, Ambikan, Anoop T., Mulder, Lance A., Depla, Josse A., Freeze, Eline, Koen, Gerrit, Calitz, Carlemi, Sood, Vikas, Vieira de Sá, Renata, Neogi, Ujjwal, Pajkrt, Dasja, Sridhar, Adithya, Wolthers, Katja C.

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SARS-CoV-2 variants mediated tissue-specific metabolic reprogramming determines the disease pathophysiology in a hamster model von Kaur Sardarni, Urvinder, Ambikan, Anoop T, Acharya, Arpan, Johnson, Samuel D, Avedissian, Sean N., Végvári, Ákos, Neogi, Ujjwal, Byrareddy, Siddappa N.

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Fecal Metabolome Signature in the HIV-1 Elite Control Phenotype: Enrichment of Dipeptides Acts as an HIV-1 Antagonist but a Prevotella Agonist von Sperk, Maike, Ambikan, Anoop T, Ray, Shilpa, Singh, Kamal, Mikaeloff, Flora, Diez, Rafael Ceña, Narayanan, Ashwathy, Vesterbacka, Jan, Nowak, Piotr, Sönnerborg, Anders, Neogi, Ujjwal

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Rural and urban exposures shape early life immune development in South African children with atopic dermatitis and nonallergic children von Lunjani, Nonhlanhla, Ambikan, Anoop T., Hlela, Carol, Levin, Michael, Mankahla, Avumile, Heldstab‐Kast, Jeannette I., Boonpiyathad, Tadech, Tan, Ge, Altunbulakli, Can, Gray, Clive, Nadeau, Kari C., Neogi, Ujjwal, Akdis, Cezmi A., O'Mahony, Liam

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Temporal cytokine storm dynamics in dengue infection predicts severity von Bhatt, Puneet, Varma, Muralidhar, Sood, Vikas, Ambikan, Anoop, Jayaram, Anup, Babu, Naren, Gupta, Soham, Mukhopadhyay, Chiranjay, Neogi, Ujjwal

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Role of myeloid cells in system-level immunometabolic dysregulation during prolonged successful HIV-1 treatment von Svensson Akusjärvi, Sara, Krishnan, Shuba, Ambikan, Anoop T., Mikaeloff, Flora, Munusamy Ponnan, Sivasankaran, Vesterbacka, Jan, Lourda, Magda, Nowak, Piotr, Sönnerborg, Anders, Neogi, Ujjwal

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Systems-level temporal immune-metabolic profile in Crimean-Congo hemorrhagic fever virus infection von Ambikan, Anoop T., Elaldi, Nazif, Svensson-Akusjärvi, Sara, Bagci, Binnur, Pektas, Ayse Nur, Hewson, Roger, Bagci, Gokhan, Arasli, Mehmet, Appelberg, Sofia, Mardinoglu, Adil, Sood, Vikas, Végvári, Ákos, Benfeitas, Rui, Gupta, Soham, Cetin, Ilhan, Mirazimi, Ali, Neogi, Ujjwal

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Increased acquired protease inhibitor drug resistance mutations in minor HIV-1 quasispecies from infected patients suspected of failing on national second-line therapy in South Afr... von Obasa, Adetayo Emmanuel, Ambikan, Anoop T, Gupta, Soham, Neogi, Ujjwal, Jacobs, Graeme Brendon

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Plasma Metabolic Signature and Abnormalities in HIV-Infected Individuals on Long-Term Successful Antiretroviral Therapy von Babu, Hemalatha, Sperk, Maike, Ambikan, Anoop T., Rachel, Gladys, Viswanathan, Vinod Kumar, Tripathy, Srikanth P., Nowak, Piotr, Hanna, Luke Elizabeth, Neogi, Ujjwal

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Effects of the Antimicrobial Peptide LL-37 and Innate Effector Mechanisms in Colistin-Resistant Klebsiella pneumoniae With mgrB Insertions von Al-Farsi, Hissa M, Al-Adwani, Salma, Ahmed, Sultan, Vogt, Carmen, Ambikan, Anoop T, Leber, Anna, Al-Jardani, Amina, Al-Azri, Saleh, Al-Muharmi, Zakariya, Toprak, Muhammet S, Giske, Christian G, Bergman, Peter

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Multi-omics insights into host-viral response and pathogenesis in Crimean-Congo hemorrhagic fever viruses for novel therapeutic target von Neogi, Ujjwal, Elaldi, Nazif, Appelberg, Sofia, Ambikan, Anoop, Kennedy, Emma, Dowall, Stuart, Bagci, Binnur K, Gupta, Soham, Rodriguez, Jimmy E, Svensson-Akusjärvi, Sara, Monteil, Vanessa, Vegvari, Akos, Benfeitas, Rui, Banerjea, Akhil, Weber, Friedemann, Hewson, Roger, Mirazimi, Ali

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Transcriptomics and Targeted Proteomics Analysis to Gain Insights Into the Immune-control Mechanisms of HIV-1 Infected Elite Controllers von Zhang, Wang, Ambikan, Anoop T., Sperk, Maike, van Domselaar, Robert, Nowak, Piotr, Noyan, Kajsa, Russom, Aman, Sönnerborg, Anders, Neogi, Ujjwal

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Multi-omics personalized network analyses highlight progressive disruption of central metabolism associated with COVID-19 severity von Ambikan, Anoop T., Yang, Hong, Krishnan, Shuba, Svensson Akusjärvi, Sara, Gupta, Soham, Lourda, Magda, Sperk, Maike, Arif, Muhammad, Zhang, Cheng, Nordqvist, Hampus, Ponnan, Sivasankaran Munusamy, Sönnerborg, Anders, Treutiger, Carl Johan, O’Mahony, Liam, Mardinoglu, Adil, Benfeitas, Rui, Neogi, Ujjwal

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Feasibility of Known RNA Polymerase Inhibitors as Anti-SARS-CoV-2 Drugs von Neogi, Ujjwal, Hill, Kyle J, Ambikan, Anoop T, Heng, Xiao, Quinn, Thomas P, Byrareddy, Siddappa N, Sönnerborg, Anders, Sarafianos, Stefan G, Singh, Kamal

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Distinct lipid profile, low-level inflammation, and increased antioxidant defense signature in HIV-1 elite control status von Sperk, Maike, Mikaeloff, Flora, Svensson-Akusjärvi, Sara, Krishnan, Shuba, Ponnan, Sivasankaran Munusamy, Ambikan, Anoop T., Nowak, Piotr, Sönnerborg, Anders, Neogi, Ujjwal

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Genomic Insights Into Clinical Shiga Toxin-Producing Escherichia coli Strains: A 15-Year Period Survey in Jönköping, Sweden von Bai, Xiangning, Zhang, Ji, Hua, Ying, Jernberg, Cecilia, Xiong, Yanwen, French, Nigel, Löfgren, Sture, Hedenström, Ingela, Ambikan, Anoop, Mernelius, Sara, Matussek, Andreas

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