Hepatocellular Carcinoma Detection by Plasma Methylated DNA: Discovery, Phase I Pilot, and Phase II Clinical Validation von Kisiel, John B., Dukek, Brian A., V.S.R. Kanipakam, Reddappa, Ghoz, Hassan M., Yab, Tracy C., Berger, Calise K., Taylor, William R., Foote, Patrick H., Giama, Nasra H., Onyirioha, Kristeen, Abdallah, Mohamed A., Burger, Kelli N., Slettedahl, Seth W., Mahoney, Douglas W., Smyrk, Thomas C., Lewis, Jason T., Giakoumopoulos, Maria, Allawi, Hatim T., Lidgard, Graham P., Roberts, Lewis R., Ahlquist, David A.

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Novel Methylated DNA Markers in the Surveillance of Colorectal Cancer Recurrence von Xie, Hao, Mahoney, Douglas W, Foote, Patrick H, Burger, Kelli N, Doering, Karen A, Taylor, William R, Then, Sara S, Cao, Xiaoming, McGlinch, Maria, Berger, Calise K, Wu, Tsung-Teh, Hubbard, Joleen M, Allawi, Hatim T, Kaiser, Michael W, Lidgard, Graham P, Ahlquist, David A, Kisiel, John B

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Discovery, Validation, and Application of Novel Methylated DNA Markers for Detection of Esophageal Cancer in Plasma von Qin, Yi, Wu, Chung W, Taylor, William R, Sawas, Tarek, Burger, Kelli N, Mahoney, Douglas W, Sun, Zhifu, Yab, Tracy C, Lidgard, Graham P, Allawi, Hatim T, Buttar, Navtej S, Smyrk, Thomas C, Iyer, Prasad G, Katzka, David A, Ahlquist, David A, Kisiel, John B

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Validation of a methylated DNA marker panel for the nonendoscopic detection of Barrett’s esophagus in a multisite case-control study von Iyer, Prasad G., Taylor, William R., Slettedahl, Seth W., Lansing, Ramona L., Hemminger, Lois L., Cayer, Frances K., Mahoney, Douglas W., Giakoumopoulos, Maria, Allawi, Hatim T., Wu, Tsung-Teh, Wang, Kenneth K., Wolfsen, Herbert C., Antpack, Eduardo, Kisiel, John B.

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High Detection Rates of Pancreatic Cancer Across Stages by Plasma Assay of Novel Methylated DNA Markers and CA19-9 von Majumder, Shounak, Taylor, William R, Foote, Patrick H, Berger, Calise K, Wu, Chung Wah, Mahoney, Douglas W, Bamlet, William R, Burger, Kelli N, Postier, Neil, de la Fuente, Jaime, Doering, Karen A, Lidgard, Graham P, Allawi, Hatim T, Petersen, Gloria M, Chari, Suresh T, Ahlquist, David A, Kisiel, John B

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Analysis of DNA Methylation at Specific Loci in Stool Samples Detects Colorectal Cancer and High-Grade Dysplasia in Patients With Inflammatory Bowel Disease von Kisiel, John B., Klepp, Pasquale, Allawi, Hatim T., Taylor, William R., Giakoumopoulos, Maria, Sander, Tamara, Yab, Tracy C., Moum, Bjorn A., Lidgard, Graham P., Brackmann, Stephan, Mahoney, Douglas W., Roseth, Arne, Ahlquist, David A.

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Detection of Gastric Cancer with Novel Methylated DNA Markers: Discovery, Tissue Validation, and Pilot Testing in Plasma von Anderson, Bradley W, Suh, Yun-Suhk, Choi, Boram, Lee, Hyuk-Joon, Yab, Tracy C, Taylor, William R, Dukek, Brian A, Berger, Calise K, Cao, Xiaoming, Foote, Patrick H, Devens, Mary E, Boardman, Lisa A, Kisiel, John B, Mahoney, Douglas W, Slettedahl, Seth W, Allawi, Hatim T, Lidgard, Graham P, Smyrk, Thomas C, Yang, Han-Kwang, Ahlquist, David A

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Methylated DNA markers for plasma detection of ovarian cancer: Discovery, validation, and clinical feasibility von Marinelli, Lisa M., Kisiel, John B., Slettedahl, Seth W., Mahoney, Douglas W., Lemens, Maureen A., Shridhar, Vijayalakshmi, Taylor, William R., Staub, Julie K., Cao, Xiaoming, Foote, Patrick H., Burger, Kelli N., Berger, Calise K., O'Connell, Maria C., Doering, Karen A., Giakoumopoulos, Maria, Berg, Hannah, Volkmann, Carla, Solsrud, Adam, Allawi, Hatim T., Kaiser, Michael, Vaccaro, Abram M., Albright Crawford, Catherine, Moehlenkamp, Cynthia, Shea, Gracie, Deist, Melissa S., Schoolmeester, J. Kenneth, Kerr, Sarah E., Sherman, Mark E., Bakkum-Gamez, Jamie N.

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Methylated DNA in Pancreatic Juice Distinguishes Patients With Pancreatic Cancer From Controls von Majumder, Shounak, Raimondo, Massimo, Taylor, William R., Yab, Tracy C., Berger, Calise K., Dukek, Brian A., Cao, Xiaoming, Foote, Patrick H., Wu, Chung Wah, Devens, Mary E., Mahoney, Douglas W., Smyrk, Thomas C., Pannala, Rahul, Chari, Suresh T., Vege, Santhi Swaroop, Topazian, Mark D., Petersen, Bret T., Levy, Michael J., Rajan, Elizabeth, Gleeson, Ferga C., Abu Dayyeh, Barham, Nguyen, Cuong C., Faigel, Douglas O., Woodward, Timothy A., Wallace, Michael B., Petersen, Gloria, Allawi, Hatim T., Lidgard, Graham P., Kisiel, John B., Ahlquist, David A.

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Blood Plasma Methylated DNA Markers in the Detection of Lymphoma: Discovery, Validation, and Clinical Pilot von Witzig, Thomas E., Taylor, William R., Mahoney, Douglas W., Bamlet, William R., Foote, Patrick H., Burger, Kelli N., Doering, Karen A., Devens, Mary E., Arndt, Jacquelyn R., O'Connell, Maria C., Berger, Calise K., Novak, Anne J., Cerhan, James R., Hennek, Jacquelyn, Katerov, Slava, Allawi, Hatim T., Jevremovic, Dragan, Dao, Linda N., Graham, Rondell P., Kisiel, John B.

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Nearest-Neighbor Thermodynamics and NMR of DNA Sequences with Internal A·A, C·C, G·G, and T·T Mismatches von Peyret, Nicolas, Seneviratne, P. Ananda, Allawi, Hatim T, SantaLucia, John

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Comparison of Tissue-Based Molecular Markers in Younger versus Older Patients with Colorectal Neoplasia von Limburg, Paul J, Mahoney, Douglas W, Ahlquist, David A, Allawi, Hatim T, Johnson, Scott C, Kaiser, Michael, Katerov, Viatcheslav E, Statz, Sandra, Graham, Rondell P, Foote, Patrick H, Doering, Karen A, Burger, Kelli N, Lidgard, Graham P, Kisiel, John B

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Methylated DNA Markers in Voided Urine for the Identification of Clinically Significant Prostate Cancer von Shah, Paras, Taylor, William R, Negaard, Brianna J, Gochanour, Benjamin R, Mahoney, Douglas W, Then, Sara S, Devens, Mary E, Foote, Patrick H, Doering, Karen A, Burger, Kelli N, Nikolai, Brandon, Kaiser, Michael W, Allawi, Hatim T, Cheville, John C, Kisiel, John B, Gettman, Matthew T

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Thermodynamics and NMR of Internal G·T Mismatches in DNA von Allawi, Hatim T, SantaLucia, John

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Plasma Assay of Cell-Free Methylated DNA Markers of Colorectal Cancer: A Tumor-Agnostic Approach to Monitor Recurrence and Response to Anticancer Therapies von Zhu, Mojun, Taylor, William R, Mahoney, Douglas W, Then, Sara S, Berger, Calise K, Burger, Kelli N, Gonser, Anna M, Doering, Karen A, Xie, Hao, Foote, Patrick H, Kaiser, Michael W, Allawi, Hatim T, Hubbard, Joleen M, Kisiel, John B

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Improved Nearest-Neighbor Parameters for Predicting DNA Duplex Stability von SantaLucia, John, Allawi, Hatim T, Seneviratne, P. Ananda

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Detection of VAR2CSA-Captured Colorectal Cancer Cells from Blood Samples by Real-Time Reverse Transcription PCR von Bang-Christensen, Sara R., Katerov, Viatcheslav, Jørgensen, Amalie M., Gustavsson, Tobias, Choudhary, Swati, Theander, Thor G., Salanti, Ali, Allawi, Hatim T., Agerbæk, Mette Ø.

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Nearest-Neighbor Thermodynamics of Internal A·C Mismatches in DNA:  Sequence Dependence and pH Effects von Allawi, Hatim T, SantaLucia, John

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Nearest Neighbor Thermodynamic Parameters for Internal G·A Mismatches in DNA von Allawi, Hatim T, SantaLucia, John

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Quantitation of microRNAs using a modified Invader assay von Allawi, Hatim T, Dahlberg, James E, Olson, Sarah, Lund, Elsebet, Olson, Marilyn, Ma, Wu-Po, Takova, Tsetska, Neri, Bruce P, Lyamichev, Victor I

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