Sparse network modeling and metscape-based visualization methods for the analysis of large-scale metabolomics data von Basu, Sumanta, Duren, William, Evans, Charles R, Burant, Charles F, Michailidis, George, Karnovsky, Alla

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Metabolomics and diabetes: analytical and computational approaches von Sas, Kelli M, Karnovsky, Alla, Michailidis, George, Pennathur, Subramaniam

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Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data von Karnovsky, Alla, Weymouth, Terry, Hull, Tim, Tarcea, V. Glenn, Scardoni, Giovanni, Laudanna, Carlo, Sartor, Maureen A., Stringer, Kathleen A., Jagadish, H. V., Burant, Charles, Athey, Brian, Omenn, Gilbert S.

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Rapid metabolic shifts occur during the transition between hunger and satiety in Drosophila melanogaster von Wilinski, Daniel, Winzeler, Jasmine, Duren, William, Persons, Jenna L., Holme, Kristina J., Mosquera, Johan, Khabiri, Morteza, Kinchen, Jason M., Freddolino, Peter L., Karnovsky, Alla, Dus, Monica

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Glycolytic Enzymes Coalesce in G Bodies under Hypoxic Stress von Jin, Meiyan, Fuller, Gregory G., Han, Ting, Yao, Yao, Alessi, Amelia F., Freeberg, Mallory A., Roach, Nathan P., Moresco, James J., Karnovsky, Alla, Baba, Misuzu, Yates, John R., Gitler, Aaron D., Inoki, Ken, Klionsky, Daniel J., Kim, John K.

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LRpath analysis reveals common pathways dysregulated via DNA methylation across cancer types von Kim, Jung H, Karnovsky, Alla, Mahavisno, Vasudeva, Weymouth, Terry, Pande, Manjusha, Dolinoy, Dana C, Rozek, Laura S, Sartor, Maureen A

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Pathway Analysis for Targeted and Untargeted Metabolomics von Karnovsky, Alla, Li, Shuzhao

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Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks von Gao, Jing, Tarcea, V. Glenn, Karnovsky, Alla, Mirel, Barbara R., Weymouth, Terry E., Beecher, Christopher W., Cavalcoli, James D., Athey, Brian D., Omenn, Gilbert S., Burant, Charles F., Jagadish, H. V.

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Septic Shock Nonsurvivors Have Persistently Elevated Acylcarnitines Following Carnitine Supplementation von Puskarich, Michael A, Evans, Charles R, Karnovsky, Alla, Das, Arun K, Jones, Alan E, Stringer, Kathleen A

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Comparing the Fasting and Random-Fed Metabolome Response to an Oral Glucose Tolerance Test in Children and Adolescents: Implications of Sex, Obesity, and Insulin Resistance von LaBarre, Jennifer L, Hirschfeld, Emily, Soni, Tanu, Kachman, Maureen, Wigginton, Janis, Duren, William, Fleischman, Johanna Y, Karnovsky, Alla, Burant, Charles F, Lee, Joyce M

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ConceptGen: a gene set enrichment and gene set relation mapping tool von Sartor, Maureen A., Mahavisno, Vasudeva, Keshamouni, Venkateshwar G., Cavalcoli, James, Wright, Zachary, Karnovsky, Alla, Kuick, Rork, Jagadish, H.V., Mirel, Barbara, Weymouth, Terry, Athey, Brian, Omenn, Gilbert S.

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Signal intensities derived from different NMR probes and parameters contribute to variations in quantification of metabolites von Lacy, Paige, McKay, Ryan T, Finkel, Michael, Karnovsky, Alla, Woehler, Scott, Lewis, Michael J, Chang, David, Stringer, Kathleen A

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Metabolomic signatures associated with weight gain and psychosis spectrum diagnoses: A pilot study von Lee, Jiwon, Costa-Dookhan, Kenya, Panganiban, Kristoffer, MacKenzie, Nicole, Treen, Quinn Casuccio, Chintoh, Araba, Remington, Gary, Müller, Daniel J, Sockalingam, Sanjeev, Gerretsen, Philip, Sanches, Marcos, Karnovsky, Alla, Stringer, Kathleen A, Ellingrod, Vicki L, Tso, Ivy F, Taylor, Stephan F, Agarwal, Sri Mahavir, Hahn, Margaret K, Ward, Kristen M

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Genetic and Metabolite Variability in One-Carbon Metabolism Applied to an Insulin Resistance Model in Patients With Schizophrenia Receiving Atypical Antipsychotics von Ward, Kristen M, Burghardt, Kyle, Kraal, A Zarina, Jaeger, Andrew, Yeomans, Larisa, McHugh, Cora, Karnovsky, Alla, Stringer, Kathleen A, Ellingrod, Vicki L

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metabCombiner 2.0: Disparate Multi-Dataset Feature Alignment for LC-MS Metabolomics von Habra, Hani, Meijer, Jennifer L, Shen, Tong, Fiehn, Oliver, Gaul, David A, Fernández, Facundo M, Rempfert, Kaitlin R, Metz, Thomas O, Peterson, Karen E, Evans, Charles R, Karnovsky, Alla

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class of selective antibacterials derived from a protein kinase inhibitor pharmacophore von Miller, J. Richard, Dunham, Steve, Mochalkin, Igor, Banotai, Craig, Bowman, Matthew, Buist, Susan, Dunkle, Bill, Hanna, Debra, Harwood, H. James, Huband, Michael D, Karnovsky, Alla, Kuhn, Michael, Limberakis, Chris, Liu, Jia Y, Mehrens, Shawn, Mueller, W. Thomas, Narasimhan, Lakshmi, Ogden, Adam, Ohren, Jeff, Prasad, J.V.N. Vara, Shelly, John A, Skerlos, Laura, Sulavik, Mark, Thomas, V. Hayden, VanderRoest, Steve, Wang, LiAnn, Wang, Zhigang, Whitton, Amy, Zhu, Tong, Stover, C. Kendall

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Molecular characterization of the endoplasmic reticulum: Insights from proteomic studies von Chen, Xuequn, Karnovsky, Alla, Sans, Maria Dolors, Andrews, Philip C, Williams, John A

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Pharmacometabolomics identifies candidate predictor metabolites of an L‐carnitine treatment mortality benefit in septic shock von Puskarich, Michael A., Jennaro, Theodore S., Gillies, Christopher E., Evans, Charles R., Karnovsky, Alla, McHugh, Cora E., Flott, Thomas L., Jones, Alan E., Stringer, Kathleen A., Shapiro, Nathan I, Guirgis, Faheem W, Runyon, Michael, Adams, Jason Y, Sherwin, Robert, Arnold, Ryan, Roberts, Brian W, Kurz, Michael C, Wang, Henry E, Kline, Jeffrey A, Mark Courtney, D, Trzeciak, Stephen, Sterling, Sarah A, Nandi, Utsav, Patki, Deepti, Viele, Kert

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Lipidomic Signature of Progression of Chronic Kidney Disease in the Chronic Renal Insufficiency Cohort von Afshinnia, Farsad, Rajendiran, Thekkelnaycke M, Karnovsky, Alla, Soni, Tanu, Wang, Xue, Xie, Dawei, Yang, Wei, Shafi, Tariq, Weir, Matthew R, He, Jiang, Brecklin, Carolyn S, Rhee, Eugene P, Schelling, Jeffrey R, Ojo, Akinlolu, Feldman, Harold, Michailidis, George, Pennathur, Subramaniam

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Sustained Perturbation of Metabolism and Metabolic Subphenotypes Are Associated With Mortality and Protein Markers of the Host Response von Jennaro, Theodore S, Puskarich, Michael A, Evans, Charles R, Karnovsky, Alla, Flott, Thomas L, McLellan, Laura A, Jones, Alan E, Stringer, Kathleen A

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