New strategies to improve minimap2 alignment accuracy von Li, Heng

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YaHS: yet another Hi-C scaffolding tool von Zhou, Chenxi, McCarthy, Shane A, Durbin, Richard

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CoV-Spectrum: analysis of globally shared SARS-CoV-2 data to identify and characterize new variants von Chen, Chaoran, Nadeau, Sarah, Yared, Michael, Voinov, Philippe, Xie, Ning, Roemer, Cornelius, Stadler, Tanja

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igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV) von Robinson, James T, Thorvaldsdottir, Helga, Turner, Douglass, Mesirov, Jill P

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NanoPack2: population-scale evaluation of long-read sequencing data von De Coster, Wouter, Rademakers, Rosa

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Make Interactive Complex Heatmaps in R von Gu, Zuguang, Hübschmann, Daniel

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Cellsnp-lite: an efficient tool for genotyping single cells von Huang, Xianjie, Huang, Yuanhua

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MIMOSA2: a metabolic network-based tool for inferring mechanism-supported relationships in microbiome‐metabolome data von Noecker, Cecilia, Eng, Alexander, Muller, Efrat, Borenstein, Elhanan

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Unbiased pangenome graphs von Garrison, Erik, Guarracino, Andrea

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APSCALE: advanced pipeline for simple yet comprehensive analyses of DNA metabarcoding data von Buchner, Dominik, Macher, Till-Hendrik, Leese, Florian

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Nanopore base calling on the edge von Peresini, Peter, Boza, Vladimir, Brejova, Brona, Vinar, Tomas

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TRASH: Tandem Repeat Annotation and Structural Hierarchy von Wlodzimierz, Piotr, Hong, Michael, Henderson, Ian R

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PyHMMER: a Python library binding to HMMER for efficient sequence analysis von Larralde, Martin, Zeller, Georg

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A mixture model for determining SARS-Cov-2 variant composition in pooled samples von Valieris, Renan, Drummond, Rodrigo D, Defelicibus, Alexandre, Dias-Neto, Emmanuel, Rosales, Rafael A, Tojal da Silva, Israel

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Theory of local k-mer selection with applications to long-read alignment von Shaw, Jim, Yu, Yun William

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Accelerated nanopore basecalling with SLOW5 data format von Samarakoon, Hiruna, Ferguson, James M, Gamaarachchi, Hasindu, Deveson, Ira W

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DeepCellEss: cell line-specific essential protein prediction with attention-based interpretable deep learning von Li, Yiming, Zeng, Min, Zhang, Fuhao, Wu, Fang-Xiang, Li, Min

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Micro-DeMix: a mixture beta-multinomial model for investigating the heterogeneity of the stool microbiome compositions von Liu, Ruoqian, Wang, Yue, Cheng, Dan

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Damsel: Analysis and visualisation of DamID sequencing in R von Page, Caitlin G, Londsdale, Andrew, Mitchell, Katrina A, Schröder, Jan, Harvey, Kieran F, Oshlack, Alicia

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Benchmarking the empirical accuracy of short-read sequencing across the M. tuberculosis genome von Marin, Maximillian, Vargas, Roger, Harris, Michael, Jeffrey, Brendan, Epperson, L Elaine, Durbin, David, Strong, Michael, Salfinger, Max, Iqbal, Zamin, Akhundova, Irada, Vashakidze, Sergo, Crudu, Valeriu, Rosenthal, Alex, Farhat, Maha Reda

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